Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0515
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    29   0.55 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   1.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   5.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   6.7  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   8.9  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 65  SLFSFVKARFSWIFLLIR 12
           SLFSF++ +FSWI  L+R
Sbjct: 559 SLFSFIRTQFSWIAYLMR 576


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 314 GN*DTSRDPYEATKSQCQTSGSRKTSSN 397
           GN     D YEA +  C+T GSR +SS+
Sbjct: 35  GNRYKKFDSYEAAQEFCRTEGSRYSSSS 62


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 162 AIFRSSLIFNHFFYFLLVFSIRVIFCILGFLWFFVFFCQSSF-LLDFL 22
           ++FR  L+F  F  F L FS    F       F V+F  SSF +L FL
Sbjct: 111 SLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYF--SSFPILHFL 156



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 138 FNHFFYFLLVFSIRVIFCILGFLWFFVFFCQSSFLLDFL 22
           F +F +      + +  C+L F +F +FF   SF   FL
Sbjct: 98  FPNFLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFL 136


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 171 FTCAIFRSSLIFNHFFYFLLVFSIRVIFCILGFLWFFVFF 52
           F    F SS I    F+F++     VI  I+  LW +  F
Sbjct: 256 FIIFCFLSSFIITGVFFFIMSICPMVISLIIAPLWIYFTF 295


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 138 FNHFFYFLLVFSIRVIFCILGFLWFFVFFCQSSFLLD 28
           F  FFYF L      +F  L F +FF   C+   LLD
Sbjct: 108 FCFFFYFSLFSFFSFLFTSLHFNFFF-RLCRHKHLLD 143


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 580 PSSFSDVTYQVCCYHYLFEIFQIYCSILVSALSSFLILGG 461
           P  +  V +     +YL +++Q YC+  ++A +     GG
Sbjct: 447 PFGYGMVLFYFSANNYLIDVYQNYCASALAAKTMVRSAGG 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,236
Number of Sequences: 5004
Number of extensions: 32084
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)