Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0515
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    31   0.98 
01_06_0746 - 31636024-31641396                                         29   2.3  
05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,536...    28   5.2  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    27   9.2  

>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 129 FFYFLLVFSIRV-IFCILGFLWFFVFFCQSSFLLDFLIDQSL 7
           FF  +L ++  +     LGFLWF  F+ +SS ++ F I+ SL
Sbjct: 541 FFLHILDYTATIGTLTDLGFLWFREFYLESSRVIQFPIECSL 582


>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
 Frame = -1

Query: 564  MLLIKFAAITIFLRFSKFTVQFWF---LLYLPS*F*GAILSLYVVFPF-----SWAAWVS 409
            ++++    + IFL+F+KF +   F   L ++P+ + G I    V+ PF      WA+ VS
Sbjct: 1675 VIILAVLVLIIFLKFTKFQIIDIFTSLLAFIPTGW-GLISIAQVIRPFIESTVVWASVVS 1733

Query: 408  VQKRFELVL 382
            V + +E++L
Sbjct: 1734 VARLYEILL 1742


>05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,
            5369636-5369748,5369824-5369916,5370081-5370244,
            5370328-5370564,5370739-5370883,5370982-5371160,
            5371997-5372142,5372239-5372366,5372441-5372614,
            5372706-5372735,5373219-5373380,5373460-5373705,
            5373733-5373870,5373974-5374174,5374304-5374448,
            5374575-5374681,5374830-5374970,5375274-5375539,
            5375621-5375745,5375843-5376109,5376250-5376263
          Length = 1174

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 169  EKREDGPVRRSARPSKIRD 225
            E++E+ PV+R  RP K+RD
Sbjct: 1082 EEKEEKPVKRRGRPRKVRD 1100


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/66 (28%), Positives = 25/66 (37%)
 Frame = +1

Query: 22  KKIQEKRALTKENKEPKEAKDTKNNSNAXXXXXXXXXXXXXTGSKNGTSEKREDGPVRRS 201
           +K    R+L +E+K PKE  DT+ N                       S      PV+RS
Sbjct: 367 QKSATPRSLAQEDKSPKENGDTRTNVFHLTLISRSQSMSANHSMSKSMSISPRRSPVKRS 426

Query: 202 ARPSKI 219
           A   KI
Sbjct: 427 AISPKI 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,325,654
Number of Sequences: 37544
Number of extensions: 185058
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)