Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0515
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_9703| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   3.1  
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_9275| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)                  27   9.4  

>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   RHETLINKKIQEKRALTKENKEPKEAKDTKNNSNA 105
           +H+ +INKK QE R + +E   P+  +  + N N+
Sbjct: 195 KHQRIINKKNQEYRNIVEECPYPRRLETREKNFNS 229


>SB_9703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 148 GSKNGTSEKREDGPVRRSARPSKIRDYAKMIRDNSQIQTFLMK 276
           G K G+   +  G    S +  + RD+AK +RD    + ++M+
Sbjct: 6   GRKRGSKTLKCRGENETSVKTPRFRDFAKFLRDFRNFKNYIMR 48


>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1885

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = -1

Query: 141  IFNHF-FYFLLVFSIRVIFCIL--GFLWFFVFFCQSSF-LLDFLI 19
            + N+F ++F  VF+I +   I+  G +     FC+S+F LLDFL+
Sbjct: 947  VLNYFDYFFTAVFTIEITIKIIAYGVILHKGSFCRSAFNLLDFLV 991


>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 183 VLTFFTCAIFRSSLIFNHFFYFLLVFSIRV 94
           +LT F+CAI  SS++ N F    +++S R+
Sbjct: 255 ILTIFSCAIAVSSVLGNGFIILAVIWSPRL 284


>SB_9275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 308 VQGN*DTSRDPYEATKSQCQTSGSRKTS 391
           VQGN DT+++  +     C+  G+R+TS
Sbjct: 210 VQGNRDTNQESTQTFSIPCEAQGNRETS 237


>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 601

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 151 SKNGTSEKREDGPVRRSARPSKIR-DYAKMIRDNSQIQTFLMKNLTTMIPMITSSRKLRY 327
           +K   S K +D       R  K++ D+AK +R+ SQ+  +   +      ++  S++L Y
Sbjct: 22  AKTDHSRKLQDIDDEYEQRIEKMKADHAKALRERSQVIEYQTDSTRKATEILEKSKELEY 81

Query: 328 LPR 336
           L +
Sbjct: 82  LDK 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,554
Number of Sequences: 59808
Number of extensions: 214945
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)