Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0515
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical pr...    32   0.38 
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    31   0.88 
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      31   0.88 
Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z93377-4|CAB07578.2|  325|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical
           protein K08F4.5 protein.
          Length = 215

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +1

Query: 7   ETLINKKIQEKRALTKENKEPKEAKDTKNNSNAXXXXXXXXXXXXXTGSKNGTSEKREDG 186
           E +  KK +EK+  TK+ +  +E K+ +                     KN   EK+E+G
Sbjct: 74  EKVPEKKEEEKKDATKKEEAKEEKKEEERKEEKKEESKEGEKKNSGEEKKNSGDEKKEEG 133

Query: 187 PVRRSARPSKIRDYAK 234
             +  A+  + ++ AK
Sbjct: 134 GKKDDAKDGEKKEEAK 149


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 154 KNGTSEKREDGPVRRSARPSKIRDYAKMIRDNSQIQ 261
           +  + ++R+D PVRR   PS IR  ++ +R +S  Q
Sbjct: 406 RKSSPKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQ 441


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 154 KNGTSEKREDGPVRRSARPSKIRDYAKMIRDNSQIQ 261
           +  + ++R+D PVRR   PS IR  ++ +R +S  Q
Sbjct: 406 RKSSPKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQ 441


>Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 5/131 (3%)
 Frame = +1

Query: 19  NKKIQEKRALTKENKEPKEAKDTKNNSNA-XXXXXXXXXXXXXTGSKNGTS--EKREDGP 189
           NKK ++K  +    K+  +AKD K  S                  +K G S  +KR+ G 
Sbjct: 171 NKKKEKKERIKTLEKDDNKAKDAKGPSKVKKEKLQKTDRGSARQKTKTGQSNRQKRQQGS 230

Query: 190 VRRS--ARPSKIRDYAKMIRDNSQIQTFLMKNLTTMIPMITSSRKLRYLPRPV*SNEEPV 363
           VRRS  A+P      A   +  +      ++N+ T +P    ++     P       E +
Sbjct: 231 VRRSAAAKPENATPVATTPQVPTGKNYVPLQNIATTLPQPPPAKDKNKAPSK--DATEGL 288

Query: 364 SNQW*SQNKLK 396
              W S+ K K
Sbjct: 289 LKSWISKAKQK 299


>Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 5/131 (3%)
 Frame = +1

Query: 19  NKKIQEKRALTKENKEPKEAKDTKNNSNA-XXXXXXXXXXXXXTGSKNGTS--EKREDGP 189
           NKK ++K  +    K+  +AKD K  S                  +K G S  +KR+ G 
Sbjct: 171 NKKKEKKERIKTLEKDDNKAKDAKGPSKVKKEKLQKTDRGSARQKTKTGQSNRQKRQQGS 230

Query: 190 VRRS--ARPSKIRDYAKMIRDNSQIQTFLMKNLTTMIPMITSSRKLRYLPRPV*SNEEPV 363
           VRRS  A+P      A   +  +      ++N+ T +P    ++     P       E +
Sbjct: 231 VRRSAAAKPENATPVATTPQVPTGKNYVPLQNIATTLPQPPPAKDKNKAPSK--DATEGL 288

Query: 364 SNQW*SQNKLK 396
              W S+ K K
Sbjct: 289 LKSWISKAKQK 299


>Z93377-4|CAB07578.2|  325|Caenorhabditis elegans Hypothetical
           protein F13A7.8 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = -1

Query: 177 TFFTCAIFR----SSLIFNHFF---YFLLVFSIRVIFCILGFLWFFVFFCQSSFLLDFLI 19
           +FF C  F+    ++++  H F   Y L ++ I  +  I+G +WFF+         +++I
Sbjct: 108 SFFLCTHFKHQSLATILMQHIFPKWYDLSIYIICAVAPIIGGIWFFLLMPTKKEQWEYII 167

Query: 18  D 16
           +
Sbjct: 168 E 168


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 304 TSSRKLRYLPRPV*SNEEPVSNQW*SQNKLKPLLNRHPRRPGKGEDHVKTQNCPLKSRRK 483
           T  RKL   P  + S E+ V+      +    LL + P R  + E+ V+T   P+K  R+
Sbjct: 77  TPIRKLA--PESIPSLEDQVTPPMRRSSSGSMLLRQTPERIRRQEEDVETPGSPVKRYRR 134

Query: 484 IKQKPKL 504
               P+L
Sbjct: 135 SGSMPRL 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,935,534
Number of Sequences: 27780
Number of extensions: 177008
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)