Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0513
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           31   0.72 
11_01_0789 + 6612624-6612863                                           28   6.7  
03_05_0665 + 26554362-26554796                                         28   6.7  

>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -3

Query: 591 LESVHIVKIYSCTHVLEIIEXQNYIQKSWCIKIYRHFRSSYK 466
           +E +HIV +Y+   V E IE    ++K W + +++ F + ++
Sbjct: 817 IEGLHIVSLYNVKKVPEGIEFLRSLKKLWLLHLHKDFNTYWE 858


>11_01_0789 + 6612624-6612863
          Length = 79

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -3

Query: 591 LESVHIVKIYSCTHVLEIIEXQNYIQKSWCIKIYRHFRSSYKD 463
           +E ++IV +     V + IE    ++K W + ++++F+S + D
Sbjct: 22  IEGLYIVSLPELERVPQGIETLCSLKKLWLLNLHKYFKSHWTD 64


>03_05_0665 + 26554362-26554796
          Length = 144

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 219 NL*FISSIHKILTLKYYFNPLVSCKHSIHH 130
           +L  ISS+H   TL     PLV  +H+ HH
Sbjct: 49  HLPLISSLHTAPTLTTIATPLVGAQHTRHH 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,334
Number of Sequences: 37544
Number of extensions: 267559
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)