Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0513
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    29   2.0  
Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 513 KSWCIKIYRHFRSSYKDLAGRNDCLNAILYAFTG*LYLNTQNMILRGYKNHNAVLFLLGT 334
           K WCI+++ HF  +Y+D  G + C N      +G    N  N++L   K   +++  L  
Sbjct: 241 KVWCIRVFFHFVLNYQD--GSDYCWNYFHSTLSGPADENEYNVLLDQTKTDPSLVQSLTK 298

Query: 333 Y 331
           Y
Sbjct: 299 Y 299


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 555 THVLEIIEXQNYIQKSWCIKIYRHFRSSYKDLAGRNDCLNAILYAF 418
           T V E++    YI ++   +  +H R  +  L     C+N ILYAF
Sbjct: 360 TIVDELLTSFGYICRTSNTQTLKHMRMGFNALTYCQSCINPILYAF 405


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 555 THVLEIIEXQNYIQKSWCIKIYRHFRSSYKDLAGRNDCLNAILYAF 418
           T V E++    YI ++   +  +H R  +  L     C+N ILYAF
Sbjct: 360 TIVDELLTSFGYICRTSNTQTLKHMRMGFNALTYCQSCINPILYAF 405


>Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical
           protein T16G1.3 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 603 YSESLESVHIVKIYSCTHVLEIIEXQNYIQKS 508
           + E L +  ++KI SC HVL +++  N   KS
Sbjct: 36  HGEHLPNRFVLKITSCMHVLNVLDQMNLQDKS 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,549
Number of Sequences: 27780
Number of extensions: 274770
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)