Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0513
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 84  SSYVLCRLNSFQATISFSNGSYKVQ 10
           SS +  R++   AT+SF NG ++V+
Sbjct: 401 SSGMAGRVHISNATLSFLNGEFEVE 425


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 276 RFFIXYCSFKTN 311
           +FF  YC+ KTN
Sbjct: 213 KFFTDYCNSKTN 224


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 276 RFFIXYCSFKTN 311
           +FF  YC+ KTN
Sbjct: 213 KFFTDYCNSKTN 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,470
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)