Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0513
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01580.1 68414.m00075 ferric-chelate reductase, putative simi...    33   0.20 
At1g23020.1 68414.m02876 ferric-chelate reductase, putative simi...    28   4.2  
At1g47056.1 68414.m05221 F-box family protein  ; similar to SKP1...    28   5.6  

>At1g01580.1 68414.m00075 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile: PF01794 ferric
           reductase like transmembrane component
          Length = 725

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 469 IRRSEVSVYFYTPRFLYIILXFYYFEHMGAGINFDYVYAFQAFAI 603
           IRR    V+FYT  +LYI+   ++  H+G   +F  +  F  F +
Sbjct: 281 IRRRFFEVFFYT-HYLYIVFMLFFVLHVGISFSFIALPGFYIFLV 324


>At1g23020.1 68414.m02876 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 693

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 469 IRRSEVSVYFYTPRFLYIILXFYYFEHMG---AGINFDYVYAF 588
           IRR    V+FYT  +LY++   ++  H+G   A I+F   Y F
Sbjct: 271 IRRRFFEVFFYT-HYLYMVFMLFFVFHVGISYALISFPGFYIF 312


>At1g47056.1 68414.m05221 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 518

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 609 MSYSESLESVHIVKIYSCTH 550
           +SY  SLES+H+VK   CT+
Sbjct: 279 ISYCSSLESLHLVKTPECTN 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,433
Number of Sequences: 28952
Number of extensions: 240881
Number of successful extensions: 382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)