Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0512
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 109 2e-25
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 102 5e-23
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 3.6
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.8
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 25 6.3
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 25 6.3
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 8.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 8.3
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.3
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 8.3
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 109 bits (263), Expect = 2e-25
Identities = 53/91 (58%), Positives = 66/91 (72%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + + +E R PKY RKS+P +R+D Y II P+ SE+AMKKIED+NTLVF VH AN
Sbjct: 31 FRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKAN 90
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKKA 507
IK AVKKLY ++ K+NTLIRP+G KKA
Sbjct: 91 KFTIKNAVKKLYSVDAVKINTLIRPNGTKKA 121
Score = 38.3 bits (85), Expect = 8e-04
Identities = 19/33 (57%), Positives = 21/33 (63%)
Frame = +2
Query: 152 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
V KA AQ+ V KG H K RK+R S FRRPK
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPK 35
Score = 29.9 bits (64), Expect = 0.29
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ V+L+ D DALDVAN+IG +
Sbjct: 119 KKAFVKLSADADALDVANRIGFL 141
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 102 bits (244), Expect = 5e-23
Identities = 50/91 (54%), Positives = 63/91 (69%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + + ++ R PKY RKS+ R+D Y II P+ SE+AMKKIED+NTLVF VH AN
Sbjct: 31 FRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKAN 90
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKKA 507
IK AV+KLY + K+NTLIRP+G KKA
Sbjct: 91 KFTIKEAVRKLYSVEPVKINTLIRPNGTKKA 121
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +2
Query: 152 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
V KA AQ+ V KG H K +K+R S FRRPK
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPK 35
Score = 29.9 bits (64), Expect = 0.29
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ V+L+ D DALDVAN+IG +
Sbjct: 119 KKAFVKLSADADALDVANRIGFL 141
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 52 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 141
S+NCQ + +++C EA D D G K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 196 TWEESTENSQLCAFPQTQDVEPPRHPKYPRKSLPKRNR-MDAYNIIKFPL 342
+W TENS + + P KY RK+ K N +D+ + K P+
Sbjct: 385 SWHGDTENSVKQSLASPSEASLPNLSKYSRKNAKKLNEWLDSLD-FKLPI 433
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 472 NTLIRPDGKKKASYDSLEIMTHWTLPTKLAS 564
N LIRP + Y +++ +WTL +L +
Sbjct: 261 NELIRPSSTSLSKYFPHKVLQNWTLDPELCA 291
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 178 EGCKR*TWEESTENSQLCAFPQ-TQDV-EPPRHPKY 279
E CK + C F Q++ EPPRHPKY
Sbjct: 330 EPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKY 365
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 74 AWVWQFWLLL 45
+W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/51 (17%), Positives = 24/51 (47%)
Frame = +1
Query: 310 MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKKLYDINV 462
+ A+++ +F E ++ +DN T I H + + + A +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 287 FLGYLGCLGGSTSWVCGNAQSCEFSVL 207
++GY+ C+ G + +C NA + V+
Sbjct: 427 YVGYISCVAGMGAMICVNATTSMSKVM 453
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 74 AWVWQFWLLL 45
+W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,298
Number of Sequences: 5004
Number of extensions: 41276
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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