Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0512
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 126 1e-29
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 126 1e-29
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 29 2.1
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672... 29 2.8
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 29 2.8
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236... 28 6.5
07_01_0885 + 7353926-7354770,7354845-7355487 27 8.5
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 126 bits (304), Expect = 1e-29
Identities = 62/104 (59%), Positives = 77/104 (74%), Gaps = 6/104 (5%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + + ++ R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV A+
Sbjct: 52 FHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKAD 111
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
IKAAVKK+YDI KVNTLIRPDGKKKA YD+L++
Sbjct: 112 KKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDV 155
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ V+L DYDALDVANKIGII
Sbjct: 140 KKAYVKLTPDYDALDVANKIGII 162
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
+ALKA + V G K +KIR SV F RPK
Sbjct: 26 QALKAAKAVKSGTAKKTTKKIRTSVTFHRPK 56
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 126 bits (304), Expect = 1e-29
Identities = 62/104 (59%), Positives = 77/104 (74%), Gaps = 6/104 (5%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + + ++ R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV A+
Sbjct: 42 FHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKAD 101
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
IKAAVKK+YDI KVNTLIRPDGKKKA YD+L++
Sbjct: 102 KKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDV 145
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ V+L DYDALDVANKIGII
Sbjct: 130 KKAYVKLTPDYDALDVANKIGII 152
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
+ALK + V G ++ +KIR SV F RPK
Sbjct: 16 QALKVAKAVKSGSIKRKSKKIRTSVTFHRPK 46
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 385 LVFIVHTSANXHHIKAAVKKLYDINVAKVNTLIRP 489
L+ +H H IK +KK YD + +K +I+P
Sbjct: 300 LILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334
>12_01_0748 -
6728221-6728305,6728788-6728842,6729202-6729289,
6729681-6729818,6729978-6730142,6730235-6730354,
6730555-6730631,6730738-6731113,6731523-6732617
Length = 732
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 278 YLGCLGGSTSWVCGNAQSCEFSVLSSHVHLLQPSS 174
YLGC+GG N +C+ ++ VHLL+P++
Sbjct: 695 YLGCIGGLYKRT--NFANCKTETETNQVHLLEPAT 727
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 238 PQTQDVEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKIEDNNT-LVFIVHTSA 411
PQ++ EP + + P+ PK + +++ +S A K EDNN L I T
Sbjct: 180 PQSEPTEPKKEKEQPKAPEPKATKTEESFLSEDRTFSSPIARKLAEDNNVPLSSIKGTGP 239
Query: 412 NXHHIKAAVKKLYDINVAK 468
+ +KA ++ Y +VAK
Sbjct: 240 DGRILKADIED-YLASVAK 257
>04_03_0995 +
21521877-21521977,21522152-21522217,21523630-21523696,
21523959-21524041,21524318-21524359,21524614-21524733,
21524806-21524869,21525028-21525113,21525217-21525299,
21525994-21526070,21526549-21526567,21526568-21526661,
21527042-21527087
Length = 315
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 238 EMHRVANFPY-SLPM-FTFYNLPLSLKCFSNRFHYFFLSLNPSLFGLRCNLQFGNCWLGF 65
E+ + PY PM F +L + CF ++++F +SLN L N F + GF
Sbjct: 181 EVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFAVSLNERLDFFESNWAF---FAGF 237
Query: 64 GS 59
GS
Sbjct: 238 GS 239
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 201 PCSPFTTFL*ALSALVTGFTTFFCPLIPVFL 109
P SPFT F A+SA+ +CP++ + +
Sbjct: 204 PVSPFTVFSYAVSAIRLWKVELYCPVVAMIM 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,125
Number of Sequences: 37544
Number of extensions: 254820
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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