Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0512
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   5e-29
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)         83   2e-16
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              29   2.1  
SB_27177| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)                  27   8.6  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score =  124 bits (299), Expect = 5e-29
 Identities = 62/94 (65%), Positives = 74/94 (78%), Gaps = 6/94 (6%)
 Frame = +1

Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
           R+PKYPR S P+ N++D Y IIK PLT+E+AMKKIEDNNTLVFIV   AN   IKAAVKK
Sbjct: 174 RNPKYPRTSAPRINKLDHYAIIKHPLTTESAMKKIEDNNTLVFIVDVRANKPQIKAAVKK 233

Query: 445 LYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
           LYDI V+KVNTL+RPDG+KKA       YD+L++
Sbjct: 234 LYDIVVSKVNTLVRPDGQKKAYVRLAPDYDALDV 267



 Score = 34.3 bits (75), Expect = 0.075
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
           KA KA++ V KG    + +K+R SV F RPK
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPK 168



 Score = 34.3 bits (75), Expect = 0.075
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +3

Query: 498 EESVVRLARDYDALDVANKIG 560
           +++ VRLA DYDALDV+NK+G
Sbjct: 252 KKAYVRLAPDYDALDVSNKVG 272


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 43/63 (68%), Positives = 49/63 (77%), Gaps = 6/63 (9%)
 Frame = +1

Query: 358 MKKIEDNNTLVFIVHTSANXHHIKAAVKKLYDINVAKVNTLIRPDGKKKA------SYDS 519
           MKKIEDNNTLVFIV   AN   IKAAVKKLYDI V+KVNTL+RPDG+KKA       YD+
Sbjct: 1   MKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDA 60

Query: 520 LEI 528
           L++
Sbjct: 61  LDV 63



 Score = 34.3 bits (75), Expect = 0.075
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +3

Query: 498 EESVVRLARDYDALDVANKIG 560
           +++ VRLA DYDALDV+NK+G
Sbjct: 48  KKAYVRLAPDYDALDVSNKVG 68


>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 40  CGNSSQNCQTQASSFQIEDCTEAQKDWD*GTKKSSETCY*ST*GSEEGCK 189
           CGN + NC  +A +   E  +    DW       +ETC      SEE C+
Sbjct: 129 CGNGTSNCNCEACTDFSEVISAELYDW----VPQNETCVVKNYSSEEACR 174


>SB_27177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = +2

Query: 149 PVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKXXXXXXXXXXXXXXCLREIAWMPTTS 328
           P+T A+K    V+K E   R  ++ N +  RR +              C  E+ +   TS
Sbjct: 92  PLTLAVKLTNDVIKLERESREERLLNEIRNRRKEYELHKRASLNHRMKCQGEVYFGQETS 151

Query: 329 LNSLSRLKQ 355
               S  KQ
Sbjct: 152 RIGFSYFKQ 160


>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
          Length = 391

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 202 EESTENSQLCAFPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIE 372
           E+S+E+ Q C   Q   +   R  K P K   KRN +   N+ K    +  A  KI+
Sbjct: 25  EDSSESEQPCRM-QHGSLRVKRKSKTPHKKRKKRNSVIIENVSKLKGDNNIAEGKID 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,753
Number of Sequences: 59808
Number of extensions: 299231
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)