Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0512
         (594 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   7.4  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   7.4  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    23   9.8  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 439 KKLYDINVAKVNTLIRPDG 495
           K+LYD  ++  N LIRP G
Sbjct: 25  KRLYDDLLSNYNRLIRPVG 43


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 519 RVVRRFLLTIRPDECVDFSNIYIIEFLDCSL 427
           +VVR+    ++P E  D ++  I E LD  L
Sbjct: 335 KVVRQIAEMVKPKELRDLTDANITEVLDIHL 365


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 310 MDAYNIIKFPLTSEAAMKKIEDNNTLVFIV 399
           +D+YNI++ P+ +E+   ++    TL+ I+
Sbjct: 47  LDSYNILERPVVNESDPLQLSFGLTLMQII 76


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,939
Number of Sequences: 2352
Number of extensions: 10031
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)