Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0512
(594 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U43701-1|AAB03210.1| 156|Homo sapiens ribosomal protein L23a pr... 138 2e-32
U02032-1|AAA03341.1| 156|Homo sapiens ribosomal protein L23a pr... 138 2e-32
L13799-1|AAA35681.1| 147|Homo sapiens protein ( Homo sapiens (c... 138 2e-32
BC058041-1|AAH58041.1| 156|Homo sapiens ribosomal protein L23a ... 138 2e-32
BC014459-1|AAH14459.1| 156|Homo sapiens ribosomal protein L23a ... 138 2e-32
AF001689-1|AAC51934.1| 156|Homo sapiens ribosomal protein L23A ... 138 2e-32
U37230-1|AAB17510.1| 156|Homo sapiens ribosomal protein L23a pr... 134 3e-31
BC105600-1|AAI05601.1| 121|Homo sapiens MGC70863 protein protein. 117 4e-26
BC065556-1|AAH65556.1| 121|Homo sapiens similar to RPL23AP7 pro... 114 3e-25
AE006463-8|AAK61228.1| 156|Homo sapiens 60S ribosomal protein L... 111 2e-24
BC098172-1|AAH98172.1| 130|Homo sapiens RPL23AP13 protein protein. 105 9e-23
BC096740-1|AAH96740.1| 130|Homo sapiens RPL23AP13 protein protein. 105 9e-23
BC096706-1|AAH96706.1| 130|Homo sapiens RPL23AP13 protein protein. 105 9e-23
AC092839-2|AAX93105.1| 130|Homo sapiens unknown protein. 105 9e-23
BC060042-1|AAH60042.1| 81|Homo sapiens LOC649946 protein protein. 63 6e-10
BC017930-1|AAH17930.1| 81|Homo sapiens LOC649946 protein protein. 63 6e-10
AK125274-1|BAC86108.1| 349|Homo sapiens protein ( Homo sapiens ... 36 0.11
AL844851-8|CAM25789.1| 123|Homo sapiens major histocompatibilit... 34 0.44
AL844851-6|CAI18575.2| 442|Homo sapiens major histocompatibilit... 34 0.44
AL669813-9|CAM24949.1| 123|Homo sapiens major histocompatibilit... 34 0.44
AL669813-7|CAI17628.1| 442|Homo sapiens major histocompatibilit... 34 0.44
AL645939-8|CAM25440.1| 123|Homo sapiens major histocompatibilit... 34 0.44
AL645939-6|CAI18086.2| 442|Homo sapiens major histocompatibilit... 34 0.44
AL022723-13|CAI20359.1| 442|Homo sapiens major histocompatibili... 34 0.44
BC038855-1|AAH38855.1| 392|Homo sapiens TMEM16K protein protein. 31 2.3
BX005428-8|CAM26185.1| 123|Homo sapiens major histocompatibilit... 30 5.4
BX005428-6|CAM26183.1| 442|Homo sapiens major histocompatibilit... 30 5.4
BC009260-1|AAH09260.2| 460|Homo sapiens HLA-F protein protein. 30 5.4
AK001237-1|BAA91573.1| 589|Homo sapiens protein ( Homo sapiens ... 30 7.1
DQ060036-1|AAY43130.1| 900|Homo sapiens polymerase (DNA directe... 29 9.4
AY136549-1|AAN52116.1| 900|Homo sapiens DNA polymerase N protein. 29 9.4
AL158068-2|CAM20461.1| 900|Homo sapiens polymerase (DNA directe... 29 9.4
AL136360-1|CAM16854.1| 900|Homo sapiens polymerase (DNA directe... 29 9.4
>U43701-1|AAB03210.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 138 bits (333), Expect = 2e-32
Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R PKYPRKS P+RN++D Y IIKFPLT+E+AMKKIEDNNTLVFIV AN H IK AVKK
Sbjct: 56 RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
LYDI+VAKVNTLIRPDG+KKA YD+L++
Sbjct: 116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 149
Score = 39.9 bits (89), Expect = 0.007
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG H + +KIR S FRRPK
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 50
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>U02032-1|AAA03341.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 138 bits (333), Expect = 2e-32
Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R PKYPRKS P+RN++D Y IIKFPLT+E+AMKKIEDNNTLVFIV AN H IK AVKK
Sbjct: 56 RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
LYDI+VAKVNTLIRPDG+KKA YD+L++
Sbjct: 116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 149
Score = 39.9 bits (89), Expect = 0.007
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG H + +KIR S FRRPK
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 50
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>L13799-1|AAA35681.1| 147|Homo sapiens protein ( Homo sapiens
(clone 01) liver expressed protein mRNA, 3'end. ).
Length = 147
Score = 138 bits (333), Expect = 2e-32
Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R PKYPRKS P+RN++D Y IIKFPLT+E+AMKKIEDNNTLVFIV AN H IK AVKK
Sbjct: 47 RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 106
Query: 445 LYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
LYDI+VAKVNTLIRPDG+KKA YD+L++
Sbjct: 107 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 140
Score = 39.9 bits (89), Expect = 0.007
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG H + +KIR S FRRPK
Sbjct: 11 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 41
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIGII
Sbjct: 125 KKAYVRLAPDYDALDVANKIGII 147
>BC058041-1|AAH58041.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 138 bits (333), Expect = 2e-32
Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R PKYPRKS P+RN++D Y IIKFPLT+E+AMKKIEDNNTLVFIV AN H IK AVKK
Sbjct: 56 RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
LYDI+VAKVNTLIRPDG+KKA YD+L++
Sbjct: 116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 149
Score = 39.9 bits (89), Expect = 0.007
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG H + +KIR S FRRPK
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 50
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>BC014459-1|AAH14459.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 138 bits (333), Expect = 2e-32
Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R PKYPRKS P+RN++D Y IIKFPLT+E+AMKKIEDNNTLVFIV AN H IK AVKK
Sbjct: 56 RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
LYDI+VAKVNTLIRPDG+KKA YD+L++
Sbjct: 116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 149
Score = 39.9 bits (89), Expect = 0.007
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG H + +KIR S FRRPK
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 50
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>AF001689-1|AAC51934.1| 156|Homo sapiens ribosomal protein L23A
protein.
Length = 156
Score = 138 bits (333), Expect = 2e-32
Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R PKYPRKS P+RN++D Y IIKFPLT+E+AMKKIEDNNTLVFIV AN H IK AVKK
Sbjct: 56 RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
LYDI+VAKVNTLIRPDG+KKA YD+L++
Sbjct: 116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 149
Score = 39.9 bits (89), Expect = 0.007
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG H + +KIR S FRRPK
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 50
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>U37230-1|AAB17510.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 134 bits (323), Expect = 3e-31
Identities = 65/94 (69%), Positives = 75/94 (79%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R PKYPRKS P+RN++D Y II FPLT+E+AMKKIEDNNTLVFIV AN H I AVKK
Sbjct: 56 RQPKYPRKSAPRRNKLDHYAIINFPLTTESAMKKIEDNNTLVFIVDVKANKHQISQAVKK 115
Query: 445 LYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
LYDI+VAKVNTLIRPDG+KKA YD+L++
Sbjct: 116 LYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 149
Score = 39.9 bits (89), Expect = 0.007
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG H + +KIR S FRRPK
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 50
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>BC105600-1|AAI05601.1| 121|Homo sapiens MGC70863 protein protein.
Length = 121
Score = 117 bits (281), Expect = 4e-26
Identities = 59/103 (57%), Positives = 73/103 (70%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R P+YP+KS P+RN++ Y IIKFPLT+E+A+KKIE+NNTLVF V AN H I+ AVKK
Sbjct: 15 RQPRYPQKSTPRRNKLGHYAIIKFPLTTESAVKKIEENNTLVFTVDVKANKHQIRQAVKK 74
Query: 445 LYDINVAKVNTLIRPDGKKKASYDSLEIMTHWTLPTKLASYKL 573
LYD +VAKV TLI PD +KKA + + TKL S KL
Sbjct: 75 LYDSDVAKVTTLICPDKEKKAYVRLAPDYDAFNVVTKLGSPKL 117
>BC065556-1|AAH65556.1| 121|Homo sapiens similar to RPL23AP7
protein protein.
Length = 121
Score = 114 bits (274), Expect = 3e-25
Identities = 58/103 (56%), Positives = 71/103 (68%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R P+YPRKS P+RN++ Y IIKFPL +E+A+KKIE+NNTLVF V AN H I+ AVKK
Sbjct: 15 RQPRYPRKSTPRRNKLGHYAIIKFPLATESAVKKIEENNTLVFTVDVKANKHQIRQAVKK 74
Query: 445 LYDINVAKVNTLIRPDGKKKASYDSLEIMTHWTLPTKLASYKL 573
LYD +VAKV TLI PD + KA + + TKL S KL
Sbjct: 75 LYDSDVAKVTTLICPDKENKAYVRLAPDYDAFDVVTKLGSPKL 117
>AE006463-8|AAK61228.1| 156|Homo sapiens 60S ribosomal protein L23A
like protein.
Length = 156
Score = 111 bits (266), Expect = 2e-24
Identities = 54/104 (51%), Positives = 74/104 (71%), Gaps = 6/104 (5%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + + + R P+YP KS P+RN++ Y +IKFPLT+E+A+K+ E+NNTL+F V AN
Sbjct: 46 FQRPKTLRRRRRPEYPWKSTPRRNKLGHYAVIKFPLTTESAVKRTEENNTLLFTVDVKAN 105
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
H IK AVKKLYD +VA+V TLI PDG+KKA YD+L++
Sbjct: 106 KHQIKQAVKKLYDGDVAEVTTLIPPDGEKKACVRLAPDYDALDV 149
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIGII
Sbjct: 134 KKACVRLAPDYDALDVANKIGII 156
Score = 33.9 bits (74), Expect = 0.44
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ +KG H +K R S+ F+RPK
Sbjct: 20 KALKAKKAALKGVHSHIKKKTRTSLTFQRPK 50
>BC098172-1|AAH98172.1| 130|Homo sapiens RPL23AP13 protein protein.
Length = 130
Score = 105 bits (253), Expect = 9e-23
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R P+YPRK+ P+RN++D Y IIKFPLT+E AMKKI+DNNTLVF V AN H IK AVKK
Sbjct: 56 RPPRYPRKTTPRRNKLDHYAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLI 483
L DI+ AKVNTL+
Sbjct: 116 LCDIDGAKVNTLM 128
Score = 39.5 bits (88), Expect = 0.009
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG HG + +KIR S F+RPK
Sbjct: 20 KALKAKKVVLKGVHGHKKKKIRMSPTFQRPK 50
>BC096740-1|AAH96740.1| 130|Homo sapiens RPL23AP13 protein protein.
Length = 130
Score = 105 bits (253), Expect = 9e-23
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R P+YPRK+ P+RN++D Y IIKFPLT+E AMKKI+DNNTLVF V AN H IK AVKK
Sbjct: 56 RPPRYPRKTTPRRNKLDHYAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLI 483
L DI+ AKVNTL+
Sbjct: 116 LCDIDGAKVNTLM 128
Score = 39.5 bits (88), Expect = 0.009
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG HG + +KIR S F+RPK
Sbjct: 20 KALKAKKVVLKGVHGHKKKKIRMSPTFQRPK 50
>BC096706-1|AAH96706.1| 130|Homo sapiens RPL23AP13 protein protein.
Length = 130
Score = 105 bits (253), Expect = 9e-23
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R P+YPRK+ P+RN++D Y IIKFPLT+E AMKKI+DNNTLVF V AN H IK AVKK
Sbjct: 56 RPPRYPRKTTPRRNKLDHYAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLI 483
L DI+ AKVNTL+
Sbjct: 116 LCDIDGAKVNTLM 128
Score = 39.5 bits (88), Expect = 0.009
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG HG + +KIR S F+RPK
Sbjct: 20 KALKAKKVVLKGVHGHKKKKIRMSPTFQRPK 50
>AC092839-2|AAX93105.1| 130|Homo sapiens unknown protein.
Length = 130
Score = 105 bits (253), Expect = 9e-23
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +1
Query: 265 RHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKK 444
R P+YPRK+ P+RN++D Y IIKFPLT+E AMKKI+DNNTLVF V AN H IK AVKK
Sbjct: 56 RPPRYPRKTTPRRNKLDHYAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKK 115
Query: 445 LYDINVAKVNTLI 483
L DI+ AKVNTL+
Sbjct: 116 LCDIDGAKVNTLM 128
Score = 39.5 bits (88), Expect = 0.009
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
KALKA++ V+KG HG + +KIR S F+RPK
Sbjct: 20 KALKAKKVVLKGVHGHKKKKIRMSPTFQRPK 50
>BC060042-1|AAH60042.1| 81|Homo sapiens LOC649946 protein protein.
Length = 81
Score = 63.3 bits (147), Expect = 6e-10
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +1
Query: 358 MKKIEDNNTLVFIVHTSANXHHIKAAVKKLYDINVAKVNTLIRPDGKKK 504
MKK EDNN LVF V+ AN H KKLYD +VAKVNTLIRPDG+K+
Sbjct: 1 MKKTEDNNALVFTVNVKANKHQ-----KKLYDTDVAKVNTLIRPDGEKE 44
Score = 37.9 bits (84), Expect = 0.027
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII*T 572
E+ VRLA DY+ALDVANKIGII T
Sbjct: 42 EKEHVRLAPDYNALDVANKIGIIST 66
>BC017930-1|AAH17930.1| 81|Homo sapiens LOC649946 protein protein.
Length = 81
Score = 63.3 bits (147), Expect = 6e-10
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +1
Query: 358 MKKIEDNNTLVFIVHTSANXHHIKAAVKKLYDINVAKVNTLIRPDGKKK 504
MKK EDNN LVF V+ AN H KKLYD +VAKVNTLIRPDG+K+
Sbjct: 1 MKKTEDNNALVFTVNVKANKHQ-----KKLYDTDVAKVNTLIRPDGEKE 44
Score = 37.9 bits (84), Expect = 0.027
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII*T 572
E+ VRLA DY+ALDVANKIGII T
Sbjct: 42 EKEHVRLAPDYNALDVANKIGIIST 66
>AK125274-1|BAC86108.1| 349|Homo sapiens protein ( Homo sapiens
cDNA FLJ43284 fis, clone LYMPB2000083, highly similar
to HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN F
PRECURSOR. ).
Length = 349
Score = 35.9 bits (79), Expect = 0.11
Identities = 25/57 (43%), Positives = 31/57 (54%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSTSWVCGNAQSCEFSVLSSHVHLL 186
A S V GNLM+ S FLLG F GYLGCL + V G ++ SV +S +L
Sbjct: 260 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHS--VLGRRKAQLLSVSTSQTSIL 314
>AL844851-8|CAM25789.1| 123|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 123
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V GNLM+ S FLLG F GYLGCL
Sbjct: 27 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCL 57
>AL844851-6|CAI18575.2| 442|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 442
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V GNLM+ S FLLG F GYLGCL
Sbjct: 346 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCL 376
>AL669813-9|CAM24949.1| 123|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 123
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V GNLM+ S FLLG F GYLGCL
Sbjct: 27 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCL 57
>AL669813-7|CAI17628.1| 442|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 442
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V GNLM+ S FLLG F GYLGCL
Sbjct: 346 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCL 376
>AL645939-8|CAM25440.1| 123|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 123
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V GNLM+ S FLLG F GYLGCL
Sbjct: 27 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCL 57
>AL645939-6|CAI18086.2| 442|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 442
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V GNLM+ S FLLG F GYLGCL
Sbjct: 346 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCL 376
>AL022723-13|CAI20359.1| 442|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 442
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V GNLM+ S FLLG F GYLGCL
Sbjct: 346 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCL 376
>BC038855-1|AAH38855.1| 392|Homo sapiens TMEM16K protein protein.
Length = 392
Score = 31.5 bits (68), Expect = 2.3
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 262 PRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDN-NTLVFIVHTSANXHHIKAAV 438
P+ YP KSL +R I FPL A+KK+ED T + + H +++A
Sbjct: 69 PQAKLYPGKSLLRRLLTSGIVIQVFPLHDSEALKKLEDTWYTRFALKYQPIENHRLESAY 128
Query: 439 KKLYDINVAKVNTL 480
+ + V N L
Sbjct: 129 QNHLILKVLVFNFL 142
>BX005428-8|CAM26185.1| 123|Homo sapiens major histocompatibility
complex class I F protein.
Length = 123
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/31 (58%), Positives = 19/31 (61%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V G LM+ S FLLG F GYLGCL
Sbjct: 27 AYSVVSGLLMITWWSSLFLLGVLFQGYLGCL 57
>BX005428-6|CAM26183.1| 442|Homo sapiens major histocompatibility
complex class I F protein.
Length = 442
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/31 (58%), Positives = 19/31 (61%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V G LM+ S FLLG F GYLGCL
Sbjct: 346 AYSVVSGLLMITWWSSLFLLGVLFQGYLGCL 376
>BC009260-1|AAH09260.2| 460|Homo sapiens HLA-F protein protein.
Length = 460
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/31 (58%), Positives = 19/31 (61%)
Frame = -2
Query: 356 AASDVRGNLMML*ASMRFLLGRDFLGYLGCL 264
A S V G LM+ S FLLG F GYLGCL
Sbjct: 364 AYSVVSGLLMITWWSSLFLLGVLFQGYLGCL 394
>AK001237-1|BAA91573.1| 589|Homo sapiens protein ( Homo sapiens
cDNA FLJ10375 fis, clone NT2RM2001950. ).
Length = 589
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 262 PRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIED 375
P+ YP KSL +R I FPL A+KK+ED
Sbjct: 76 PQAKLYPGKSLLRRLLTSGIVIQVFPLHDSEALKKLED 113
>DQ060036-1|AAY43130.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 292 LPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKA 432
L +RN + + K+P TSEA + + D + L I+ H IK+
Sbjct: 497 LSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKS 543
>AY136549-1|AAN52116.1| 900|Homo sapiens DNA polymerase N protein.
Length = 900
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 292 LPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKA 432
L +RN + + K+P TSEA + + D + L I+ H IK+
Sbjct: 497 LSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKS 543
>AL158068-2|CAM20461.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 292 LPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKA 432
L +RN + + K+P TSEA + + D + L I+ H IK+
Sbjct: 497 LSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKS 543
>AL136360-1|CAM16854.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 292 LPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKA 432
L +RN + + K+P TSEA + + D + L I+ H IK+
Sbjct: 497 LSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKS 543
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,974,322
Number of Sequences: 237096
Number of extensions: 1502422
Number of successful extensions: 7386
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 7282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7382
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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