Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0512
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 102 2e-22
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 100 9e-22
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical pr... 29 1.9
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 29 2.5
AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical ... 29 2.5
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 2.5
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 29 2.5
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z82054-3|CAB04841.2| 269|Caenorhabditis elegans Hypothetical pr... 27 7.6
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 102 bits (244), Expect = 2e-22
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 6/104 (5%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + + + R P+Y RKS P R+++D++ +IK P T+E++MKKIED+NTLVFIV AN
Sbjct: 36 FRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESSMKKIEDHNTLVFIVDEKAN 95
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
HHIK AV LY++ KVNTLI P +KKA YD+L++
Sbjct: 96 KHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDV 139
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 152 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 250
V KA++A++ VVKG + +R SVHFRRPK
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPK 40
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRLA DYDALDVANKIG I
Sbjct: 124 KKAYVRLASDYDALDVANKIGFI 146
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 100 bits (239), Expect = 9e-22
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 6/104 (5%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + ++ R ++PRKS PK ++MD + II+ PLT+E+AMKKIE++NTLVFIV AN
Sbjct: 37 FRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDAN 96
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKK------ASYDSLEI 528
+ IK AV KLY++ KVNTLI P +KK A YD+L++
Sbjct: 97 KYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDV 140
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +2
Query: 158 KALKAQRKVVKGEHGKRVRKIRNSVHFRRP 247
KAL A++KVVKG+ R++R SVHFRRP
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRP 40
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRL DYDALDVANKIG+I
Sbjct: 125 KKAYVRLTADYDALDVANKIGVI 147
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 31.9 bits (69), Expect = 0.35
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +1
Query: 196 TWEESTENSQLCAFPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIED 375
++ ES E+ + F D+E RHP R+ P+R + +K LT A+ +
Sbjct: 177 SYRESDEDYSVNDFAHPPDLE--RHPLSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAP 234
Query: 376 NNTLVFIVHTSANXHHIKAAVKKL 447
V +AN HIK ++L
Sbjct: 235 PTEPVAARTATANQRHIKLFEEEL 258
>Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical
protein C09G9.4 protein.
Length = 611
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 328 IKFPLTSEAAMKKIEDNNTLVF--IVHTSANXHHIKAAVKKLYDINVAKVNTLIRPDGKK 501
+K P +E + ++D +V I HT +H K A K L D+ + ++ + D
Sbjct: 155 VKVPEKAEELTEILKDLKEIVIPNICHTHHPRYHAKFAGKSLADLVASTISAALGHDVNS 214
Query: 502 KASYDSLE-IMTHWTLPTKLA 561
+S+E I+ W L T +A
Sbjct: 215 SPIIESIERIICKW-LSTSMA 234
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 283 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKKL 447
+KSL +NR ++ ++ F S +++ I NNT ++ +A + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIYT--KTAIFKGVVVAIKKL 758
>AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical
protein T01A4.1b protein.
Length = 637
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 283 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKKL 447
+KSL +NR ++ ++ F S +++ I NNT ++ +A + A+KKL
Sbjct: 79 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIYT--KTAIFKGVVVAIKKL 131
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 283 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKKL 447
+KSL +NR ++ ++ F S +++ I NNT ++ +A + A+KKL
Sbjct: 647 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIYT--KTAIFKGVVVAIKKL 699
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 283 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANXHHIKAAVKKL 447
+KSL +NR ++ ++ F S +++ I NNT ++ +A + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIYT--KTAIFKGVVVAIKKL 758
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 211 YSLPMFTFYNLPLSLKCFSNRFHYFF 134
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>Z82054-3|CAB04841.2| 269|Caenorhabditis elegans Hypothetical
protein T26F2.2 protein.
Length = 269
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -2
Query: 575 NSL--YDANFVGNVQCVIISSESYDAF 501
NSL Y +++GNV C+II +++D +
Sbjct: 166 NSLKNYFQSYIGNVPCIIIGQKNFDNY 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,398
Number of Sequences: 27780
Number of extensions: 235828
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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