Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0512
(594 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 0.74
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.0
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 23 3.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.9
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 22 5.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 5.2
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 22 5.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 6.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 6.9
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 6.9
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 6.9
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 24.6 bits (51), Expect = 0.74
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 382 TLVFIVHTSANXHHIKAAVKKLYDINVAKVNTLIRP 489
T++ I+ SA H K+LYD ++ N LIRP
Sbjct: 5 TIILIL--SARICHGNPDAKRLYDDLLSNYNRLIRP 38
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 566 YDANFVGNVQCVIISSESYDAFFLPS 489
Y N + V CV IS S AF+LP+
Sbjct: 238 YTVNLI--VPCVSISYLSVLAFYLPA 261
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 439 KKLYDINVAKVNTLIRPDG 495
K+LYD ++ N LIRP G
Sbjct: 22 KRLYDDLLSNYNRLIRPVG 40
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.0
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -2
Query: 542 VQCVIISSESYDAFFLPSGLMSVLTLATFIS*SFLTAALIWCXFALV*TIKTKVLLSSIF 363
V CV+ISS + F LP LTL I S LT L ++ T L+ S F
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLS-LTVFLNLVAESMPTTSDAVPLIGSYF 261
Query: 362 ----FIAASDVRGNLMML 321
F+ AS V +++L
Sbjct: 262 NCIMFMVASSVVLTVLVL 279
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.0
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -2
Query: 542 VQCVIISSESYDAFFLPSGLMSVLTLATFIS*SFLTAALIWCXFALV*TIKTKVLLSSIF 363
V CV+ISS + F LP LTL I S LT L ++ T L+ S F
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLS-LTVFLNLVAESMPTTSDAVPLIGSYF 261
Query: 362 ----FIAASDVRGNLMML 321
F+ AS V +++L
Sbjct: 262 NCIMFMVASSVVLTVLVL 279
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.0
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -2
Query: 542 VQCVIISSESYDAFFLPSGLMSVLTLATFIS*SFLTAALIWCXFALV*TIKTKVLLSSIF 363
V CV+ISS + F LP LTL I S LT L ++ T L+ S F
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLS-LTVFLNLVAESMPTTSDAVPLIGSYF 261
Query: 362 ----FIAASDVRGNLMML 321
F+ AS V +++L
Sbjct: 262 NCIMFMVASSVVLTVLVL 279
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.0
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -2
Query: 542 VQCVIISSESYDAFFLPSGLMSVLTLATFIS*SFLTAALIWCXFALV*TIKTKVLLSSIF 363
V CV+ISS + F LP LTL I S LT L ++ T L+ S F
Sbjct: 271 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLS-LTVFLNLVAESMPTTSDAVPLIGSYF 329
Query: 362 ----FIAASDVRGNLMML 321
F+ AS V +++L
Sbjct: 330 NCIMFMVASSVVLTVLVL 347
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 427 KAAVKKLYDINVAKVNTLIRPDGKKKASYDS 519
KAAV +L + + K + P GKK ++S
Sbjct: 226 KAAVMRLGLMEIIKFVNIFFPGGKKTTFFES 256
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 542 VQCVIISSESYDAFFLPSGLMSVLTLATFI 453
V CV+ISS + F LP LTL I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTI 232
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 542 VQCVIISSESYDAFFLPSGLMSVLTLATFI 453
V CV+ISS + F LP LTL I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTI 232
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 542 VQCVIISSESYDAFFLPSGLMSVLTLATFI 453
V CV+ISS + F LP LTL I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTI 232
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 542 VQCVIISSESYDAFFLPSGLMSVLTLATFI 453
V CV+ISS + F LP LTL I
Sbjct: 271 VPCVLISSMALLGFTLPPDSGEKLTLGVTI 300
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 21.8 bits (44), Expect = 5.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 495 TIRPDECVDFSNIYIIEFLDCSLDMVLVCTCVNNKDQGVVIFNLL 361
TI E ++ E L C + VL V +K G + +NLL
Sbjct: 50 TIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNLL 94
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 5.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 439 KKLYDINVAKVNTLIRP 489
K+LYD ++ N LIRP
Sbjct: 35 KRLYDDLLSNYNRLIRP 51
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 21.8 bits (44), Expect = 5.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 40 CGNSSQNCQTQASSFQIEDCTEAQKD 117
C NS +N S+ C EA KD
Sbjct: 163 CCNSPENNTCSISNSYTNGCVEALKD 188
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 6.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 439 KKLYDINVAKVNTLIRP 489
K+LYD ++ N L+RP
Sbjct: 30 KRLYDDLLSNYNKLVRP 46
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 6.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 439 KKLYDINVAKVNTLIRP 489
K+LYD ++ N L+RP
Sbjct: 30 KRLYDDLLSNYNKLVRP 46
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.4 bits (43), Expect = 6.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 439 KKLYDINVAKVNTLIRP 489
K+LYD ++ N L+RP
Sbjct: 26 KRLYDDLLSNYNKLVRP 42
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 220 SQLCAFPQTQDVEPPRHPKYPRKSLPKRNRMDAYN 324
+Q A PQ+Q+ P+ + + PKR + Y+
Sbjct: 1010 AQAQAKPQSQEANKPKPATGGKGTRPKRGKYRNYD 1044
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,307
Number of Sequences: 438
Number of extensions: 2655
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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