Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0512
(594 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va... 118 3e-27
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id... 114 4e-26
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 31 0.58
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co... 31 0.58
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 29 1.8
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 29 3.1
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR... 27 7.1
At3g10790.1 68416.m01299 F-box family protein contains F-box dom... 27 7.1
At1g76770.1 68414.m08934 heat shock protein-related contains sim... 27 7.1
>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
various ribosomal L23a proteins
Length = 154
Score = 118 bits (284), Expect = 3e-27
Identities = 59/104 (56%), Positives = 74/104 (71%), Gaps = 6/104 (5%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + + + PR PKYP+ S RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV A+
Sbjct: 44 FHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRAD 103
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
IK AVKK+YDI KVNTLIRPDG KKA YD+L++
Sbjct: 104 KKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 147
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRL DYDALDVANKIGII
Sbjct: 132 KKAYVRLTPDYDALDVANKIGII 154
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 149 PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPK 250
P KALKA + V G+ K+ +KIR V F RPK
Sbjct: 14 PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPK 48
>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
identical to GB:AF034694
Length = 154
Score = 114 bits (275), Expect = 4e-26
Identities = 58/104 (55%), Positives = 73/104 (70%), Gaps = 6/104 (5%)
Frame = +1
Query: 235 FPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 414
F + + + PR KYP+ S RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV A+
Sbjct: 44 FHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRAD 103
Query: 415 XHHIKAAVKKLYDINVAKVNTLIRPDGKKKA------SYDSLEI 528
IK AVKK+YDI KVNTLIRPDG KKA YD+L++
Sbjct: 104 KKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 147
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +3
Query: 498 EESVVRLARDYDALDVANKIGII 566
+++ VRL DYDALDVANKIGII
Sbjct: 132 KKAYVRLTPDYDALDVANKIGII 154
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 149 PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPK 250
P KALKA + V G+ K+ +KIR V F RPK
Sbjct: 14 PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPK 48
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 223 QLCAFPQTQDVEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKI 369
+L P+ Q E P+ P+ P+ LPK + ++ KFP S+ + K+
Sbjct: 132 ELPKVPEIQKPELPKMPEIPKPELPKFPEIPKPDLPKFPENSKPEVPKL 180
>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
contains Pfam profile PF00276: ribosomal protein L23
Length = 178
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 406 SANXHHIKAAVKKLYDINVAKVNTLIRPDGKKK 504
SA+ IK ++ LY +V KVNTL DGKKK
Sbjct: 38 SASKIEIKRVLESLYGFDVEKVNTL-NMDGKKK 69
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 383 PWSLLFTQVQTSTISRLQSRNSM 451
PWSL+ + Q+ I R+ +RNSM
Sbjct: 588 PWSLMDSSAQSDVIMRMMARNSM 610
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 383 PWSLLFTQVQTSTISRLQSRNSM 451
PWSL+ + Q+ I R+ +RNSM
Sbjct: 581 PWSLMDSSEQSDVIMRMMARNSM 603
>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1165
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 22 TFS*EGCGNSSQNCQTQASSFQIEDC---TEAQKDWD*GTKKSSETCY 156
TF+ CGN Q + + +S+ C ++A+K ++ G++ TC+
Sbjct: 891 TFNFTNCGNLEQAAKEEITSYAQRKCQLLSDARKHYNEGSEALFSTCF 938
>At3g10790.1 68416.m01299 F-box family protein contains F-box domain
Pfam:PF00646
Length = 319
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 281 GYLGCLGGSTSWVCGNAQSCEFSVL 207
G + CL ST V GN +C+F L
Sbjct: 131 GLICCLNNSTKVVIGNPTTCQFETL 155
>At1g76770.1 68414.m08934 heat shock protein-related contains
similarity to 17.9 kDa heat-shock protein [Helianthus
annuus] gi|11990130|emb|CAB55634
Length = 244
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 421 HIKAAVKKLYDINVAKVNTLIRPDGKKKASYDSLEIMTHWTLPTKLASYK 570
H+K K DI + K LI+ G+K+ L W T++ +K
Sbjct: 47 HLKGFKKDGIDIEINKEGNLIKISGRKQVEEMVLVKWVEWKKETEIKEFK 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,378,506
Number of Sequences: 28952
Number of extensions: 216750
Number of successful extensions: 664
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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