Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0511
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.29 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.29 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.29 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    26   0.29 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.29 
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    26   0.29 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.29 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   0.39 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    25   0.68 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   0.89 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   2.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   2.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   6.3  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   8.3  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   8.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.3  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   8.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.3  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.3  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   8.3  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   8.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.3  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK+HK
Sbjct: 262 RQIKIWFQNRRMKWKKEHK 280


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK+HK
Sbjct: 262 RQIKIWFQNRRMKWKKEHK 280


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK+HK
Sbjct: 262 RQIKIWFQNRRMKWKKEHK 280


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK+HK
Sbjct: 218 RQIKIWFQNRRMKWKKEHK 236


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK+HK
Sbjct: 262 RQIKIWFQNRRMKWKKEHK 280


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK+HK
Sbjct: 50  RQIKIWFQNRRMKWKKEHK 68


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK+HK
Sbjct: 262 RQIKIWFQNRRMKWKKEHK 280


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHKKEESER 274
           +Q ++W Q  R K +KQ+KK   E+
Sbjct: 199 RQIKIWFQNRRAKERKQNKKRIEEK 223


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 203 QSRLWLQTLRYKCKK-QHKK 259
           Q ++W Q  RYK K+ QH+K
Sbjct: 83  QVKIWFQNHRYKTKRAQHEK 102


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHKKEE 265
           +Q ++W Q  R K +KQ KK E
Sbjct: 198 RQVKIWFQNRRAKERKQVKKRE 219


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK++K
Sbjct: 284 RQIKIWFQNRRMKWKKENK 302


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHKKE 262
           +Q ++W Q  R K KK+ K +
Sbjct: 127 RQIKIWFQNRRMKFKKEEKNK 147


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHKKE 262
           +Q ++W Q  R K KK+ K +
Sbjct: 147 RQIKIWFQNRRMKFKKEEKNK 167


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK++K
Sbjct: 286 RQIKIWFQNRRMKWKKENK 304


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 209 RLWLQTLRYKCKKQHKKEESER 274
           ++W +  R KC++Q K+   ++
Sbjct: 114 QVWFKNRRAKCRQQQKQHNQQQ 135


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 201 NNRASGSRRCVTNARNSTRRKNLKENSKGNIQYDPTQD 314
           N   S  RR   N + S +R NLK N    I Y+  Q+
Sbjct: 126 NRIESLERRAFMNLK-SLKRLNLKGNKIATIAYETFQN 162


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 533 LREQKKIAKRVQIDTTLKQ 589
           L+EQ KI  +VQ+   LK+
Sbjct: 39  LKEQPKIEGKVQVPEALKK 57


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHKKEES 268
           +Q ++W Q  R K KK+   + S
Sbjct: 130 RQIKIWFQNRRMKHKKEQMNKVS 152


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQ 250
           +Q ++W Q  R K KK+
Sbjct: 48  RQIKIWFQNRRMKLKKE 64


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQ 250
           +Q ++W Q  R K KK+
Sbjct: 265 RQIKIWFQNRRMKLKKE 281


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/63 (14%), Positives = 28/63 (44%)
 Frame = -2

Query: 488 QILTYFLHVLICLSHFSKIIIRSSSGNTKFFELFKSFYYSSLCLSMD*ILTLKLIQYWIL 309
           +IL YF+  +  L+  +  +      N+  +     F++ ++C     ++ + ++  +  
Sbjct: 39  RILKYFIIAIYVLTILTSSVTLHVCFNSYMYAFTHIFFFFAICCDFIALIVVNIVHVFRK 98

Query: 308 SRI 300
            R+
Sbjct: 99  RRV 101


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/21 (23%), Positives = 16/21 (76%)
 Frame = +2

Query: 209 RLWLQTLRYKCKKQHKKEESE 271
           ++W +  R KC++Q ++++++
Sbjct: 172 QVWFKNRRAKCRQQLQQQQNK 192


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHKKEES 268
           +Q ++W Q  R K KK+   + S
Sbjct: 121 RQIKIWFQNRRMKHKKEQMNKVS 143


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQ 250
           +Q ++W Q  R K KK+
Sbjct: 47  RQIKIWFQNRRMKLKKE 63


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQ 250
           +Q ++W Q  R K KK+
Sbjct: 199 RQIKIWFQNRRMKLKKE 215


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQ 250
           +Q ++W Q  R K KK+
Sbjct: 258 RQIKIWFQNRRMKLKKE 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,851
Number of Sequences: 336
Number of extensions: 2251
Number of successful extensions: 28
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)