Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0511
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    58   1e-09
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    28   0.95 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   2.9  
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.1  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   8.8  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    25   8.8  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    25   8.8  

>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 26/69 (37%), Positives = 43/69 (62%)
 Frame = +3

Query: 318 VLNEFKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVRKNLMAK 497
           V ++  RE   ++Q  ++V     KL+E  +   RP DYFAEM K+D+HM+KVR+ L+ +
Sbjct: 132 VEDDLARELAFYKQGVSSVKAAFAKLREANVLISRPHDYFAEMLKSDDHMEKVRQELIKE 191

Query: 498 QAAHRASRK 524
             A + S++
Sbjct: 192 ATAKKLSQQ 200


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 228 CVTNARNSTRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQA-QAAVVEGLKKLKEL 404
           C   ARN   +  LK    GNI+ D  Q  ++  ++ E  + R   +   +E LK LK L
Sbjct: 62  CQLRARNYPLQYILKSQPFGNIKIDCQQGVLIPRWETEEWVERVVDKLNRLERLKPLKIL 121

Query: 405 GIAT 416
            + T
Sbjct: 122 DLCT 125


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/77 (22%), Positives = 34/77 (44%)
 Frame = +1

Query: 82   LNEEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPDVALQMQETAQEG 261
            L++   K+E         LKVK  +I +N    +  D   T A ++  +      ++Q  
Sbjct: 1133 LSQSTSKLESSVEGKNYLLKVKFKDINVNWDLHDGYDWEATRATISSAIEKLCDSSSQND 1192

Query: 262  RI*KKIVRVIFSMILLK 312
            +I  +   ++F  I++K
Sbjct: 1193 KISPEAKTLLFQSIVIK 1209


>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 46  QEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLT 153
           Q AFA  +   G  E + +IE  YTN V   K+ LT
Sbjct: 18  QGAFATLVAPIGDLEHLSEIELLYTNRVLPSKIPLT 53


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 82  LNEEIEKIEKKYTNNVADLK 141
           L+ EI KI+KKY N + ++K
Sbjct: 427 LHLEISKIQKKYQNQIENMK 446


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 49  EAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLTEIKLNL 171
           EA     ++   +EE+E+   K T+N+ + +  + E+KL+L
Sbjct: 532 EAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDL 572


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 70  IKPGLNEEIEKIEKKYTNNVADLKVKLTEIKLNL 171
           ++   ++ I +IEK  ++   D+K  L+E++LNL
Sbjct: 113 VRKSSDKLINEIEKTKSSLREDVKTALSEVRLNL 146


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 97  EKIEKKYTNNVADLKVKLTEIK 162
           EK+EK+ + N  +LK+KL E++
Sbjct: 99  EKLEKQSSINDKELKIKLKEVE 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,701
Number of Sequences: 5004
Number of extensions: 38618
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)