Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0511
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455... 50 2e-06
11_06_0343 + 22535914-22536684 34 0.079
07_03_1581 + 27891709-27891964,27892749-27892800,27893071-278931... 29 2.3
03_06_0705 + 35647838-35647850,35647966-35648105,35648439-356488... 29 2.3
04_01_0324 - 4305017-4305271,4305353-4305814,4305870-4306340 28 5.2
01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020... 28 5.2
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 28 6.9
07_03_0425 - 18070607-18070712,18071771-18072744 28 6.9
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 28 6.9
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 27 9.1
07_03_0064 + 12995669-12995904,12996299-12996533,12998223-129983... 27 9.1
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 27 9.1
>07_03_0356 -
17142019-17142899,17145251-17145290,17145381-17145512,
17145762-17145815,17145913-17145993,17146860-17146955,
17147439-17147611,17147750-17147823,17148515-17148622,
17148693-17148868,17149305-17149352,17150665-17150775,
17152172-17152226,17153434-17153534,17154176-17154290,
17155505-17155698
Length = 812
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 261 KNLKENSKGNIQYDPTQDPVLNE-FKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDYF 437
+N+ K I++D + +N+ RE + QA + +KL+ + + RP DY+
Sbjct: 588 ENVDWRHKLTIEHDQGEKVDVNDDLARELAFYTQALDGTRQAFEKLQSMKVRFLRPADYY 647
Query: 438 AEMAKTDEHMQKVRKNLMAKQ 500
AEM KTD HM K++ L++++
Sbjct: 648 AEMVKTDAHMHKIKGRLLSEK 668
>11_06_0343 + 22535914-22536684
Length = 256
Score = 34.3 bits (75), Expect = 0.079
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 151 TEIK-LNLPWVEKLDLVTTIAPLAPDVALQM 240
TE++ LNL W+E+L LVT P APDV + +
Sbjct: 105 TELRELNLAWIEQLLLVTDAPPAAPDVVVDV 135
>07_03_1581 +
27891709-27891964,27892749-27892800,27893071-27893138,
27893321-27893410,27893503-27893633,27893913-27894047,
27894124-27894141
Length = 249
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 297 YDPTQDPVLNEFKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFA--EMAKTDEHMQ 470
YD L +FK ++L+ A+ + K E+ A ++ D Y + E ++T +H+Q
Sbjct: 135 YDIWNIKYLKKFKWDDLVGEIAEKTHIREQKLNLEIAAAKKQRDHYLSNVEKSRTLKHIQ 194
Query: 471 KVRKNLMAKQAA 506
+ RK + A
Sbjct: 195 ERRKKKQKTEGA 206
>03_06_0705 +
35647838-35647850,35647966-35648105,35648439-35648824,
35648930-35649110,35649498-35649590,35649667-35649806,
35649906-35650005
Length = 350
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 327 EFKRENLIHRQAQAAVVEGLKKLKELGI 410
E++ E++IH A VEGLKK E G+
Sbjct: 223 EYEDESVIHHTASVGDVEGLKKALEEGV 250
>04_01_0324 - 4305017-4305271,4305353-4305814,4305870-4306340
Length = 395
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +3
Query: 240 ARNSTRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAVVEGLKKLKELGIATR 419
ARN R + K N G++ ++ D V+ + ++ + +Q+ V LK R
Sbjct: 127 ARNWARARG-KVNPDGSVTFENKSDAVVYQELLGLVVEQASQSEVESALK---------R 176
Query: 420 RPDDYFAEMAKTDEHMQKVR 479
R DD A++ T EH + R
Sbjct: 177 REDDILAKVLGTKEHPGRTR 196
>01_06_0253 -
27901204-27901251,27901673-27901744,27901944-27902030,
27902484-27902574,27903706-27903769,27904354-27904461,
27905124-27905181,27905813-27905956,27906307-27906372,
27907227-27907299,27908439-27908500,27908923-27909000,
27909124-27909229,27909317-27909483,27909961-27910048,
27911204-27911313,27911833-27911928,27912354-27912461,
27912568-27912711,27913850-27914065
Length = 661
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 401 FFELFKSFYYSSLCLSMD*ILTLKLIQYWILSRIILNITLTI 276
+ E + SFY+S+LC + + L +Y ++ +++N+ I
Sbjct: 441 YLEKYPSFYHSALCEWLKSFVRSPLFEYIVIFVLLMNLVAVI 482
>11_01_0191 +
1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 237 NARNSTRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAV 374
+ + ST+ L+E+ DP +PV N F+RE +H + +A +
Sbjct: 171 STKGSTQHVLLRESYSKGCLVDP--NPVYNVFQREGALHHRLRAVL 214
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 360 AQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVR 479
A AA+ G +L+ L I PDD+ EHM+ +R
Sbjct: 53 AAAALAAGSPRLRFLSIPDGLPDDHARAAGDLLEHMESIR 92
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 64 GLIKPGLNEEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEK 186
GLIK + I+++ +KY+ V KL E++ L + E+
Sbjct: 837 GLIKSEADRSIQEVNRKYSEIVEVFDKKLLELETRLSFFEQ 877
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 272 FQILPSCAVSCICNATSGARGAIVVTRSS 186
+ +LPS AV+ + +T RG +V +RSS
Sbjct: 707 YSLLPSVAVTPVAQSTRQKRGPVVDSRSS 735
>07_03_0064 +
12995669-12995904,12996299-12996533,12998223-12998384,
12999446-12999566,13000095-13001608
Length = 755
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 336 RENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVRKNLMAKQAA 506
RE I R + V G K+L + ++ RRPD A TDE ++K+ +++ A+ +A
Sbjct: 510 REAFI-RDHRDLVESGDKRLDDWDLS-RRPDTVLATFRFTDELLRKLGRHVEAETSA 564
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 85 NEEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPDVALQMQE 246
N E+E IE +N+ + K + K+ WV + D+ + A D ++++ E
Sbjct: 357 NVELEPIENTKHSNILRVPFKTEDGKVLPQWVSRFDIYPYLERYAQDSSVKILE 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,215,291
Number of Sequences: 37544
Number of extensions: 233259
Number of successful extensions: 864
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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