Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0511
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10515| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      33   0.25 
SB_30961| Best HMM Match : I-set (HMM E-Value=0)                       30   1.3  
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)                     30   1.7  
SB_2615| Best HMM Match : ERM (HMM E-Value=0.76)                       30   1.7  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)                      29   2.3  
SB_44460| Best HMM Match : ELK (HMM E-Value=5.3)                       29   2.3  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)                  29   3.0  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        29   4.0  
SB_7899| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_56774| Best HMM Match : DNA_pol_viral_N (HMM E-Value=0.41)          28   7.0  
SB_36577| Best HMM Match : CC (HMM E-Value=7.9)                        28   7.0  
SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_15523| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_10515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/74 (52%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
 Frame = +3

Query: 306 TQDP-VLNEFKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVRK 482
           T DP V ++FKRE + ++QAQ A   GL KL++L ++T+RP+DYFAEM KTD+HMQ+VR 
Sbjct: 89  TPDPSVHDDFKREMMFYKQAQEAAKLGLLKLQKLRVSTKRPEDYFAEMVKTDDHMQRVRS 148

Query: 483 NLMAKQAAHRASRK 524
            L+++Q A   S K
Sbjct: 149 KLLSRQQAMERSEK 162



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
 Frame = +1

Query: 46  QEAFAKGLIKPGLNEE---IEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDL 195
           Q+AFA G +K GLN+    I + +++  NNV  LK K  +I  +L W+E++D+
Sbjct: 19  QKAFASGDLKVGLNKPAGFIPRAQREPFNNVEGLKRKYDQISQSLDWLERMDV 71



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +2

Query: 512 RVEKVRPLREQKKIAKRVQIDTTLKQAAEKKQMLE 616
           R EK +  RE KK  K+VQ +   K+  EKK MLE
Sbjct: 159 RSEKAKKQREIKKYGKKVQQEVLEKRQKEKKDMLE 193


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
 Frame = +3

Query: 132 GLKSQVNRDKIKSAMGGEAGSGYNNRASGSRRCVTNARNSTRRKNLKEN-SKGNIQYDPT 308
           G KS     +++   GG+ G G  NR++  +   ++  N++  +  KE+ S+G+ +Y+  
Sbjct: 354 GNKSLRRPVRVRGGSGGKGGRGSRNRSTSDQ--PSSQENTSGYRQKKESISEGSEKYEKD 411

Query: 309 QDPVLNEFKR----ENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKV 476
            D       R     +L      +++ E  KKL   G   ++P+ Y   M+K +      
Sbjct: 412 SDSCSESISRSQSESSLKASGNDSSLGESFKKLNING-QRQKPEKYGTSMSKQNAMFTFA 470

Query: 477 RKNLMAKQAAH-RASRKFD 530
            K   A ++   R +RK D
Sbjct: 471 SKPRRAPRSPRARKNRKDD 489


>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1018

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 266 ILPSCAVSCICNATSGARGAIVVTRSSFSTHGRFNFISVNLT 141
           IL    +S  CNAT      I+   S++ T G+ NF+++N T
Sbjct: 253 ILEGTRLSLYCNATGFPEPEILWQNSAYRTIGKGNFLTLNKT 294


>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
          Length = 1557

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 46  QEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLTE 156
           +  FAKG I P  +EE+  + ++YTNN  +   +L E
Sbjct: 297 KHVFAKGYI-PNWSEEVFTVGQRYTNNTKNYAYRLRE 332


>SB_2615| Best HMM Match : ERM (HMM E-Value=0.76)
          Length = 253

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 234 TNARNSTRR---KNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAVVEGLKKLK 398
           TN++ +  R   + L++ +KG ++     D    E  R+ L+  QAQ+A VE   + K
Sbjct: 63  TNSQEAAARHEAERLEQEAKGRLERQKISDEAEAERARKELLELQAQSAAVESTGQAK 120


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 506  CCLLGHQILTYFLHVLICLSHFSKIIIRSSSGNTKFFELFKSF-YYSSLCLSMD*ILTLK 330
            CC+   ++LTYF H ++ L  +S   +  S+ N     L  +F YY  L L +  +   +
Sbjct: 2004 CCVHDGEMLTYFFHHVLTLLTYSN--VSPSASNVISVSLVMAFCYYRILTLHVVCLAGRR 2061

Query: 329  LIQYWILS 306
             + Y IL+
Sbjct: 2062 ELYYRILT 2069


>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1602

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 46  QEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLTE 156
           +  FAKG I P   EE+  + ++YTNN  +   +L E
Sbjct: 289 KHVFAKGYI-PNWTEEVFTVGQRYTNNTKNYAYRLRE 324


>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
          Length = 1318

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 46  QEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLTE 156
           +  FAKG I P   EE+  + ++YTNN  +   +L E
Sbjct: 85  KHVFAKGYI-PNWTEEVFTVGQRYTNNTKNYAYRLRE 120


>SB_44460| Best HMM Match : ELK (HMM E-Value=5.3)
          Length = 91

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +3

Query: 138 KSQVNRDKIKSAMGGEAGSGYNNRASGSRRCVTNARNSTRRKNLKENSKGNIQYDPTQDP 317
           + +VN +K    + GE   GY++R S  + C+    N+ R  +L+E  +        QDP
Sbjct: 27  EGEVNAEKRCRDLYGELLQGYSSRESAIKGCIHEVSNNIR--DLREKRE--------QDP 76

Query: 318 VLNEFKRE 341
             NEF ++
Sbjct: 77  DSNEFSKK 84


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 189 GSGYNNRASGSRRCVTNARNST--RRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQ 359
           G GY ++   +RRC  NARN    + K L+ NS  N +  P++D + +   ++ L  R+
Sbjct: 258 GVGYQSK---NRRCKNNARNDMKGKGKRLRSNSINNTE-SPSKDSINDSPLKQKLRGRK 312


>SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)
          Length = 274

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +3

Query: 255 RRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDY 434
           +  +LK   +   +    +D  ++E +++   HRQ +    +  +K+K   +  R  DD 
Sbjct: 145 QESDLKRREQWQKEMKQKKDEQVDEREKQREKHRQEKIMREQMSRKIKLRIVQKRSEDDK 204

Query: 435 FAEM--AKTDEHMQKVRKNLMAKQAAHRASRKFDH*E 539
             E    K  + M+K+R+  M  Q   R S    H E
Sbjct: 205 RQESNHNKRKKSMKKIREEKMKDQWKRRCSISLAHLE 241


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +3

Query: 387 KKLKELGIATRRPDDYFAEMAKTDEHMQKVRKNLMAKQAAH 509
           K++KEL  ++ R D    E+ +  E ++ + +++ A++AAH
Sbjct: 141 KQMKELEFSSEREDRIKRELEQYQERVKTLEESIEAERAAH 181


>SB_7899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 203 QSRLWLQTLRYKCKKQHKKE 262
           Q ++W Q  RYKC++++K++
Sbjct: 167 QVKIWFQNHRYKCRQRYKQD 186


>SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 438 AEMAKTDEHMQKVRKNLMAKQAAHRASRK 524
           AE AKT E +++++KNL+  Q ++ A  K
Sbjct: 42  AEAAKTSEFVERLKKNLVDVQTSYGALEK 70


>SB_56774| Best HMM Match : DNA_pol_viral_N (HMM E-Value=0.41)
          Length = 886

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 173 HGWRSWIWLQQSRLWLQTLRYKCKKQHKKEE 265
           + WR+++W  +S    Q +  + K++H+KE+
Sbjct: 285 NAWRAYVWHIKSDKEAQAIAVQMKERHRKEQ 315


>SB_36577| Best HMM Match : CC (HMM E-Value=7.9)
          Length = 172

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 260 PSCAVSCICNATSGARGAIVVTRSSFSTHGRFNFISVNLTF 138
           P+  V C+C  T G+ G I   +   ST  R    +V L F
Sbjct: 31  PTPCVMCVCGQTLGSEGYIEFLQPGGSTSSRAAATAVELQF 71


>SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 219 SRRCVTNARNSTRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAVVEG 383
           S R V + R STR       S G++++D T   +  +FK   +I  +  A++  G
Sbjct: 71  STRSVDDTRESTRLPGAVGGSCGHLRHDTTSPSLKEDFK---VIKAEVSASIATG 122


>SB_15523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 46  QEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLTE 156
           +  FAKG I P   EE+  + ++Y NN  +   +L E
Sbjct: 51  KHVFAKGYI-PNWTEEVFTVGQRYNNNTKNYAYRLRE 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,501,117
Number of Sequences: 59808
Number of extensions: 269074
Number of successful extensions: 1096
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)