Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0511
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-11|AAA68370.2|  340|Caenorhabditis elegans Hypothetical p...    63   2e-10
Z81085-1|CAB03112.3|  263|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    30   1.2  
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z81047-9|CAB02835.2|  339|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    28   6.2  
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    28   6.2  
Z81587-3|CAB04700.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    27   8.2  
U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    27   8.2  
U23524-4|AAC46824.1|  173|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        27   8.2  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    27   8.2  

>U28944-11|AAA68370.2|  340|Caenorhabditis elegans Hypothetical
           protein C18A3.3 protein.
          Length = 340

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 31/68 (45%), Positives = 41/68 (60%)
 Frame = +3

Query: 324 NEFKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVRKNLMAKQA 503
           ++F+RE   ++QA+ AV     +L  LGI   RP DY+AEMAK+D HMQKVRK L+  Q 
Sbjct: 125 DDFQRELNFYKQAEKAVQIAYPRLLNLGIKVLRPTDYYAEMAKSDTHMQKVRKRLLGIQE 184

Query: 504 AHRASRKF 527
                  F
Sbjct: 185 MKERQEAF 192



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = +1

Query: 46  QEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVT 201
           Q AFA GL+K GLN ++ K ++   N  A++K KL EI  +LPWVE L++VT
Sbjct: 63  QAAFAAGLLKDGLNIQVAK-KRPIINKSAEMKEKLAEITKDLPWVETLEVVT 113



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 512 RVEKVRPLREQKKIAKRVQIDTTLKQAAEKKQMLE 616
           R E  R +RE+KK A +VQ +    +  EKK + E
Sbjct: 188 RQEAFRRIREEKKFAVKVQKEVLAAKNTEKKNLAE 222


>Z81085-1|CAB03112.3|  263|Caenorhabditis elegans Hypothetical
           protein F46F3.1 protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 203 QSRLWLQTLRYKCKKQHKKEESE 271
           Q ++W Q  RYKCK+Q K+++ +
Sbjct: 141 QVKIWFQNQRYKCKRQEKEKKMD 163


>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 QSRLWLQTLRYKCKKQHKKE 262
           Q ++W Q  RYKCK+Q K++
Sbjct: 193 QVKIWFQNHRYKCKRQEKEK 212


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 QSRLWLQTLRYKCKKQHKKE 262
           Q ++W Q  RYKCK+Q K++
Sbjct: 193 QVKIWFQNHRYKCKRQEKEK 212


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/79 (24%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = -2

Query: 461 LICLSHFSKIIIRSSSGNTKFFELFKSFYYSSLCLSMD*ILTLKLIQ-YWILSRIILNIT 285
           ++ ++ F  + +   +G  ++  +F S  + ++ ++++ +    LI  Y   ++I + I 
Sbjct: 114 MLVVNSFEGLELLIIAGFMEYHYMF-SVVFGAVAVAIERLAASVLIDNYESTNKIFIPIA 172

Query: 284 LTIFFQILPSCAVSCICNA 228
           LT+FFQI+   A++C C A
Sbjct: 173 LTVFFQII---AITCSCLA 188


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 401 FFELFKSFYYSSLCLSMD*ILTLKLIQY 318
           F  +F +F++ S+CL  + +L +KLI++
Sbjct: 201 FLLMFNTFFWFSICLGFNLVLIVKLIKF 228


>Z81047-9|CAB02835.2|  339|Caenorhabditis elegans Hypothetical
           protein C41G6.11 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = -2

Query: 494 GHQILTYFLHVLICLSHFSKIIIRSSSGNTKFFELFKSFYYSSLCLSMD*ILTLKLIQYW 315
           G  +   FL + + L H  KI      GN KF  L  SF +S +    +  L +K I+++
Sbjct: 24  GVSVFFNFLVLYLLLFHSGKI------GNFKFCLL--SFQFSIV----EKKLKVKSIKHF 71

Query: 314 ILSRIILNITLTIFFQ---ILPSCA 249
            +S IIL++ +T+F Q   + P CA
Sbjct: 72  QVSSIILDLIMTLFMQPIGLFPICA 96


>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 618 GSNICFFSAACFNVVSICTLLAIFFCSLNGRTFSTRDVLLAWPSNSY-VLSACA 460
           G  + ++ AA F+  S+   + + FC +    F+ R+  L W S +Y V  ACA
Sbjct: 112 GRLVIYYLAAAFHASSLYLAVGMAFCRVKSLNFANRNNDL-WQSPNYAVRVACA 164


>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 345 LIHRQAQA-AVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVRKNLMAKQAAH 509
           L+H  A+    ++  +KL+ LGI       Y  ++A TD H+ +  +N +A Q  H
Sbjct: 211 LLHDNARPHTALKTRQKLQTLGIEVLPHPPYSPDLAPTDYHLFRSLQNHLAGQKFH 266


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 443 FSKIIIRSSSG----NTKFFELFKSFYYSSLCLSMD*ILTLKLIQY 318
           F  I++R++         F  +F +F++ S+C   + +L +KLI++
Sbjct: 183 FGSILLRATGTIFGWTNNFLVMFNTFFWFSICFGFNSVLIVKLIKF 228


>Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical
           protein T03F7.6 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 383 SFYYSSLCLSMD*ILTLKLIQYWILSRIILNITLTIF 273
           S + S  CL    I  + L +Y++L+   LN+T T+F
Sbjct: 141 SLFLSFWCLIFGIIPFIYLSEYFVLANTTLNLTATVF 177


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 70  IKPGLNEEIEKIEKKYTNNVADL 138
           I+  +   ++++EKKY N+VAD+
Sbjct: 280 IREDVTSTVDRVEKKYNNSVADM 302


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
           receptor, class v protein21 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
 Frame = -2

Query: 392 LFKSFYYSSLCLSMD*ILTLKLIQYWILSRIILNITLTIFFQILPSCAVSCICNA--TSG 219
           +F   +YS + ++ D   + + ++Y     +I   + T FF +L SC +  IC       
Sbjct: 157 IFCVIFYSHMDITYD---SPEQMKYVTDPDVIEGSSRTAFFYVLFSCLICLICYGFILKI 213

Query: 218 ARGAIVVTRSSFSTHGRFNFISVNLTF-KSATLLVYFFSIFSISSLRPGFIR 66
            R        S     R  F  V L+F     +++YF  IF  S    G IR
Sbjct: 214 VRSKSQTASVSIQREVRLAF-QVLLSFLAKLVMMIYFLLIFITSLCSAGTIR 264


>Z81587-3|CAB04700.1|  362|Caenorhabditis elegans Hypothetical
           protein T06G6.4 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 61  KGLIKPGLNEEIEKIEKKYTNNVAD-LKVKLTEIK 162
           KG +K  + E  EK+EKK   N+ D L+ K+ +++
Sbjct: 205 KGEMKKQIQELTEKVEKKGAGNIEDQLQAKIKDLE 239


>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 414 TRRPDDYFAEMAKTDEHMQKVRKNLMAKQA 503
           T+R D + AEM KTD+   +  K  + KQA
Sbjct: 192 TKRYDFWIAEMKKTDQETLRKLKTAIRKQA 221


>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 414 TRRPDDYFAEMAKTDEHMQKVRKNLMAKQA 503
           T+R D + AEM KTD+   +  K  + KQA
Sbjct: 209 TKRYDFWIAEMKKTDQETLRKLKTAIRKQA 238


>U23524-4|AAC46824.1|  173|Caenorhabditis elegans Hypothetical
           protein C29F5.5 protein.
          Length = 173

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 6/25 (24%), Positives = 12/25 (48%)
 Frame = +2

Query: 170 CHGWRSWIWLQQSRLWLQTLRYKCK 244
           C+GW  W W     +W+  +  + +
Sbjct: 125 CYGWFRWKWNNMDEVWIDVVEQRAR 149


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 414 TRRPDDYFAEMAKTDEHMQKVRKNLMAKQA 503
           T+R D + AEM KTD+   +  K  + KQA
Sbjct: 209 TKRYDFWIAEMKKTDQETLRKLKTAIRKQA 238


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 414 TRRPDDYFAEMAKTDEHMQKVRKNLMAKQA 503
           T+R D + AEM KTD+   +  K  + KQA
Sbjct: 192 TKRYDFWIAEMKKTDQETLRKLKTAIRKQA 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,659,223
Number of Sequences: 27780
Number of extensions: 216926
Number of successful extensions: 1081
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)