Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0511
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    26   0.34 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.3  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.7  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.7  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHK 256
           +Q ++W Q  R K KK+HK
Sbjct: 50  RQIKIWFQNRRMKWKKEHK 68


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHKKE 262
           +Q ++W Q  R K KK++K +
Sbjct: 312 RQIKIWFQNRRMKWKKENKSK 332


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 24/124 (19%), Positives = 45/124 (36%)
 Frame = +3

Query: 162 IKSAMGGEAGSGYNNRASGSRRCVTNARNSTRRKNLKENSKGNIQYDPTQDPVLNEFKRE 341
           ++  M    GSG +   SGS   +++  N+      +EN+      +  + P L     E
Sbjct: 588 VRKCMSPINGSGAS--GSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTLT----E 641

Query: 342 NLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVRKNLMAKQAAHRASR 521
           +L++R  +      + K +E   + +  D       KT E +            +H   R
Sbjct: 642 SLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKR 701

Query: 522 KFDH 533
              H
Sbjct: 702 SGSH 705


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -2

Query: 434 IIIRSSSGNTKFFELFKSFYYSSLCLSMD*ILTLKLIQYWILSRIILNIT 285
           I++ ++ G +K      +F Y+   + M  IL L+  + W+    + N+T
Sbjct: 189 ILLETAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIWLRPDWLFNLT 238


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQHKK 259
           +Q ++W Q  R K KK++ +
Sbjct: 50  RQIKIWFQNRRMKWKKENAR 69


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 203 QSRLWLQTLRYKCKKQH 253
           Q ++W Q  R K KKQ+
Sbjct: 51  QVKIWFQNRRTKWKKQN 67


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 82  DPVLLDPSRMLLVTLHLNLNPT 17
           +PV+LD S+    T  L+L PT
Sbjct: 170 EPVVLDDSKEEHPTCALDLTPT 191


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 200 QQSRLWLQTLRYKCKKQ 250
           +Q ++W Q  R K KK+
Sbjct: 50  RQIKIWFQNRRMKLKKE 66


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 488 DGQASSTSRVEKVRPLREQKKIAKRVQIDTTLKQAAE--KKQML 613
           + Q S++  +EK+  + E+K   K +     L++  +  +K ML
Sbjct: 22  EAQTSTSDEIEKITTVEEEKICHKAITPLDRLQRVVDWFRKNML 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,979
Number of Sequences: 438
Number of extensions: 2407
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)