Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0511
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22660.1 68416.m02860 rRNA processing protein-related contain...    50   9e-07
At4g24610.1 68417.m03525 expressed protein                             31   0.47 
At1g15940.1 68414.m01913 expressed protein similar To androgen-i...    29   1.9  
At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88...    29   2.5  
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t...    28   4.3  
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq...    28   4.3  
At2g40430.1 68415.m04986 expressed protein identical to Protein ...    28   4.3  
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    28   5.7  
At2g41720.2 68415.m05156 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At2g41720.1 68415.m05157 pentatricopeptide (PPR) repeat-containi...    28   5.7  

>At3g22660.1 68416.m02860 rRNA processing protein-related contains
           weak similarity to rRNA processing protein EBP2
           (EBNA1-binding protein homolog) (Swiss-Prot:P36049)
           [Saccharomyces cerevisiae]
          Length = 293

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = +3

Query: 318 VLNEFKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVRKNLM 491
           V ++  RE   + QA     E   KL E+G+   RP +Y+AEM K+D HM+KV+  L+
Sbjct: 87  VNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRPANYYAEMVKSDVHMEKVKSRLL 144


>At4g24610.1 68417.m03525 expressed protein 
          Length = 1145

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 94   IEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPD 225
            +E +EK+Y + ++ LK  L   KL+  +V+KL   + I  + PD
Sbjct: 895  VEALEKQYADVLSPLKENLAPKKLSFKYVQKLTKRSVIPYVVPD 938


>At1g15940.1 68414.m01913 expressed protein similar To
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]
          Length = 990

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 207 RASGSRRCVTNARNSTRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQ 365
           R  G+ + V+N   ST  KNLK   K N + D T+     + K    +HR+ +
Sbjct: 692 RTKGALKAVSNEPESTTGKNLKSLKKLNGEPDKTRGRTGKKQKVTQAMHRKIE 744


>At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88874
           Cyclin K (Fragment) {Mus musculus}; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 474

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 249 STRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAVVEGLKKLKELGI 410
           S  +KNL+++S GNI  + + D  + + K++  +H++   +  E  KK  E  I
Sbjct: 349 SEAQKNLQDHSVGNIMVEKSDDVGVVQLKKDLQLHQEEVESKQEKDKKSFEKDI 402


>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
           TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
          Length = 257

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
 Frame = +3

Query: 138 KSQVNRDKIKSAMGGEAGSGYNNRASGSRRCVTNARNSTRRKNLKENSKGNIQYDPTQDP 317
           ++QV+R +     G     G+   A  S        +    + +    K ++ YD     
Sbjct: 87  EAQVHRKRAGGFRGQRFSEGWVEFAKKS--VAKRVADMLNGEQIGGKKKSSVYYDIWNIK 144

Query: 318 VLNEFKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKT------DEHMQKVR 479
            L +FK ++L    A  + +   K    L  A R  D Y +++ K+      D  M+K R
Sbjct: 145 YLTKFKWDDLTEEIAYKSAIREQKLNMVLSAAKREKDFYLSKIEKSRAMTEIDARMEKKR 204

Query: 480 K 482
           K
Sbjct: 205 K 205


>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
           ubiquitin ligase, contains two RING finger domain;
           identical to PRT1 [Arabidopsis thaliana] GI:3319884
          Length = 410

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 237 NARNSTRRKNLKENSKGNIQYDPTQDPVLN 326
           N+R+S  +K L  NSKGNIQ    + P L+
Sbjct: 259 NSRSSKVQKTLAHNSKGNIQSYLKEGPSLS 288


>At2g40430.1 68415.m04986 expressed protein identical to Protein
           At2g40430 (Swiss-Prot:O22892) [Arabidopsis thaliana];
           similar to Glioma tumor suppressor candidate region gene
           2 protein (p60) (Swiss-Prot:Q9NZM5) [Homo sapiens]
          Length = 442

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/96 (23%), Positives = 36/96 (37%)
 Frame = +3

Query: 237 NARNSTRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAVVEGLKKLKELGIAT 416
           N  N      +K      +Q  P+ +  L   K E+   RQAQ +V +    +  LG   
Sbjct: 221 NVENEVSEAGIKLKENPFVQLKPSSNTNLK--KIEDKTPRQAQKSVGDDSVMVDLLGDDI 278

Query: 417 RRPDDYFAEMAKTDEHMQKVRKNLMAKQAAHRASRK 524
           +    YF E+    E        +   +A +  SRK
Sbjct: 279 KEDLKYFLEVGNVGEGEDNKDVKIEVSEAGNNVSRK 314


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 132 GLKSQVNRDKIKSAMGGEAGSGYNNRASG 218
           G ++   R    S  GG  G G+NNR+ G
Sbjct: 79  GYRADAGRPGSGSGYGGRGGGGWNNRSGG 107


>At2g41720.2 68415.m05156 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 683

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 582 NVVSICTLLAIFFCSLNGRTFSTRDVLLAWPSNSYVLSACAHLS 451
           NVVS+CTLLA   CS + +  +   VL A  S    L+  A+ S
Sbjct: 327 NVVSVCTLLAA--CSRSKKKVNVDTVLSAAQSRGINLNTAAYNS 368


>At2g41720.1 68415.m05157 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 822

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 582 NVVSICTLLAIFFCSLNGRTFSTRDVLLAWPSNSYVLSACAHLS 451
           NVVS+CTLLA   CS + +  +   VL A  S    L+  A+ S
Sbjct: 459 NVVSVCTLLAA--CSRSKKKVNVDTVLSAAQSRGINLNTAAYNS 500


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,897,768
Number of Sequences: 28952
Number of extensions: 195292
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)