Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0510
         (621 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LF14 Cluster: Putative uncharacterized protein; n=2; ...    34   3.1  
UniRef50_A0KPT3 Cluster: Ion channel family; n=2; Aeromonas|Rep:...    33   7.3  
UniRef50_Q7R3W8 Cluster: GLP_68_86166_84691; n=1; Giardia lambli...    32   9.6  

>UniRef50_Q6LF14 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1758

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +1

Query: 394  SNYRLEYSKSNCI---LAPFSYL*GIDTRSTAMYRDFSSHLAALDHECLNNLVHRYLEL 561
            SNY+ ++++S      L  + Y+   D    A + D  ++++ + ++CL  ++H YLE+
Sbjct: 1531 SNYQYDFNQSFLFSEKLGYYPYIHNHDNLQAAFHNDIYTYISCMYYKCLLAIIHMYLEI 1589


>UniRef50_A0KPT3 Cluster: Ion channel family; n=2; Aeromonas|Rep:
           Ion channel family - Aeromonas hydrophila subsp.
           hydrophila (strain ATCC 7966 / NCIB 9240)
          Length = 447

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 177 ILKLXLSHTPLFE--LTKDLIQK*YAH*LEDVRFLSSQCVMYLCLFRNDD 34
           I  L ++  P F+  +T+  I K     +   RF+SS+CV+ LCL+ +DD
Sbjct: 26  IWDLLVASLPHFDDWMTEQKIDKQVIFQIGIARFISSRCVLSLCLYMSDD 75


>UniRef50_Q7R3W8 Cluster: GLP_68_86166_84691; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_68_86166_84691 - Giardia lamblia
           ATCC 50803
          Length = 491

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 59  YITHCDDKK-RTSSNQCAYYFCIKSFVSSNKGVCER 163
           Y   CD +K R + + C++Y CI  ++ +  GVC R
Sbjct: 354 YANPCDTQKDRYNEDLCSFYSCIDGYMLTETGVCVR 389


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,639,605
Number of Sequences: 1657284
Number of extensions: 8992152
Number of successful extensions: 16085
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16084
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)