Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0510
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_15858| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_6208| Best HMM Match : 7tm_1 (HMM E-Value=0)                        27   9.3  

>SB_42717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 374 LRSTFICLTTGLNILNQIVF*PLFHIYKXLTHVVLQCIGILV 499
           L S F+CL+T L++L+  +   +F +YK  T VV   I  L+
Sbjct: 108 LTSRFLCLSTILHLLSIALERHIFIVYKLNTEVVTPIIVYLL 149


>SB_15858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 216 KLRKFYSTLSCVQILKLXLSHTPLFELTKD 127
           K+R  +S L CV ++   LS +P+ + TKD
Sbjct: 28  KMRVAFSVLLCVLVVVTELSASPISDKTKD 57


>SB_6208| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 559

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 57  NTSHIAMTKSARLPISAHITFVSSLLLVQIRVCVR 161
           +T H   T    LP S H   + S L+ QIR  ++
Sbjct: 95  STEHREFTSGVSLPFSKHFAPIISFLIAQIRQAMK 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,437
Number of Sequences: 59808
Number of extensions: 295868
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)