Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0509
         (506 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IBI0 Cluster: Putative uncharacterized protein PF07_0...    35   1.2  
UniRef50_P00476 Cluster: Modification methylase SPRI; n=1; Bacil...    33   3.7  

>UniRef50_Q8IBI0 Cluster: Putative uncharacterized protein
           PF07_0114; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF07_0114 - Plasmodium
           falciparum (isolate 3D7)
          Length = 956

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -1

Query: 110 ILHHHNNMYSDHHKSRYIVSVQYSNIFSFALDKIS 6
           I HH++N+ S+H+ + Y+    YS+ ++F L ++S
Sbjct: 182 INHHNSNLISNHNSNIYMCKHNYSSYYNFTLQRVS 216


>UniRef50_P00476 Cluster: Modification methylase SPRI; n=1; Bacillus
           phage SPR|Rep: Modification methylase SPRI -
           Bacteriophage SPR
          Length = 439

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -2

Query: 361 KWFNTLQYRN*LYKVGIKENIAMNELIGWSNLFKKKTPLE 242
           K+FN  Q R  LY +GI+E++  NE   WS  FK+K  L+
Sbjct: 152 KFFNVPQNRERLYIIGIREDLIKNE--EWSLDFKRKDILQ 189


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,434,258
Number of Sequences: 1657284
Number of extensions: 6865505
Number of successful extensions: 14914
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14843
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)