Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0509
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   3.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   3.7  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   6.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.6  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   8.6  

>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 383 VRCILLFLCWCSFVDKS-CY---PFCIMFLFY 466
           +RCI  F  +CSFV K  C+    F   FLFY
Sbjct: 133 MRCIRKFDHYCSFVGKDVCFSNQKFFYQFLFY 164


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 290 IHRYVFFNSYLVELIP 337
           +HRY+ FN +L+ L P
Sbjct: 397 VHRYIIFNDFLIGLRP 412


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 213 TFHGMTNIYIILIK*TLQV 157
           T HG TNIY   +K TL V
Sbjct: 842 TMHGSTNIYFGAVKATLHV 860


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 350 IKPF*GLLYYGVRCILLFLCWCSFVDKSCYPFCIMFLFYLIKFYL 484
           + PF G      RC+LLF  +  F     + F   FLF+L + ++
Sbjct: 102 LHPFTGSELSLFRCLLLFFFFLLFF--LSFSFSFSFLFFLSQIFI 144


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 383 VRCILLFLCWCSFVDKSCYPFCIMFLF 463
           V+  L FLCW    +    P C+ F+F
Sbjct: 188 VQVCLYFLCWGEANNVRFVPECLCFIF 214


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 190 DVSHSMKCNRVMSRVEKFLEVFFF*IN 270
           +V +SMKCN + S  +++  VF F I+
Sbjct: 127 NVRYSMKCNWIASPNDEYTWVFHFDID 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,563
Number of Sequences: 5004
Number of extensions: 32877
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)