Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0509
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_928| Best HMM Match : Antistasin (HMM E-Value=10)                   29   2.9  
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)                     28   3.8  
SB_44562| Best HMM Match : 7tm_1 (HMM E-Value=9e-12)                   28   5.1  
SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)                    28   5.1  
SB_5914| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-18)                  28   5.1  
SB_30954| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_928| Best HMM Match : Antistasin (HMM E-Value=10)
          Length = 334

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 14  CPEQN*KCCYTAQIQYIEICDDHYTYYYDGA 106
           C  +N   CYT    +I  C  HY Y +D A
Sbjct: 169 CLSKNGNRCYTKLQAHIRRCHGHYVYRFDKA 199


>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
          Length = 610

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 8   RFCPEQN*KCCYTAQIQYIEICDDHYTYYYDG 103
           R C      CC    I Y+  C+ +Y Y ++G
Sbjct: 473 RLCYRVGGDCCARRAIVYVRQCNGYYVYKFEG 504


>SB_44562| Best HMM Match : 7tm_1 (HMM E-Value=9e-12)
          Length = 276

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 15  VQSKTKNVAILHRYNISRFVMITIHIIMMVQYLSF*IQIL 134
           + + T+N A   RY  S   M+T+ II ++ Y  F + ++
Sbjct: 155 MNAATRNNARTERYRKSIVTMVTVFIIFILSYTPFCVSVV 194


>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
          Length = 550

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 48  HRYNISRFVMITIHIIMMVQYL 113
           H +++ R+VM+T H+  +V+Y+
Sbjct: 339 HVFHVLRYVMVTCHVFQVVRYV 360


>SB_5914| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-18)
          Length = 327

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 15  VQSKTKNVAILHRYNISRFVMITIHIIMMVQYLSF*IQIL 134
           + + T+N A   RY  S   M+T+ II ++ Y  F + ++
Sbjct: 206 MNAATRNNARTERYRKSIVTMVTVFIIFILSYTPFCVSVV 245


>SB_30954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 74  DDHYTYYYDGAIFVILNSNF 133
           DD +T++  G  F++LNS +
Sbjct: 209 DDFFTFWVGGVFFIVLNSQY 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,324,717
Number of Sequences: 59808
Number of extensions: 217524
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)