Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0509
         (506 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC150203-1|AAI50204.1|  816|Homo sapiens two pore segment channe...    31   2.3  
AY083666-1|AAM01199.1|  816|Homo sapiens two-pore channel 1 prot...    31   2.3  
AB032995-1|BAA86483.2|  857|Homo sapiens KIAA1169 protein protein.     31   2.3  

>BC150203-1|AAI50204.1|  816|Homo sapiens two pore segment channel 1
           protein.
          Length = 816

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 240 VSRGVFFLNKFDQPINSFIAMFSL 311
           V  G ++LN FD  +NSF+ +F L
Sbjct: 620 VEEGYYYLNNFDNILNSFVTLFEL 643


>AY083666-1|AAM01199.1|  816|Homo sapiens two-pore channel 1
           protein.
          Length = 816

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 240 VSRGVFFLNKFDQPINSFIAMFSL 311
           V  G ++LN FD  +NSF+ +F L
Sbjct: 620 VEEGYYYLNNFDNILNSFVTLFEL 643


>AB032995-1|BAA86483.2|  857|Homo sapiens KIAA1169 protein protein.
          Length = 857

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 240 VSRGVFFLNKFDQPINSFIAMFSL 311
           V  G ++LN FD  +NSF+ +F L
Sbjct: 661 VEEGYYYLNNFDNILNSFVTLFEL 684


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,385,521
Number of Sequences: 237096
Number of extensions: 959792
Number of successful extensions: 1250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)