Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0509
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.45 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 110 ILHHHNNMYS-DHHKSRYIVSVQYSN 36
           +L++H  + S D+H   Y+VS+ +S+
Sbjct: 219 LLYNHARLMSQDNHSKEYLVSIMFSH 244


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 72  VMITIHIIMMVQYL 113
           VM+++H++ +V YL
Sbjct: 572 VMVSVHVVALVLYL 585


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 432 DLSTNEHQHKN 400
           D+ +N HQ+KN
Sbjct: 60  DIESNSHQYKN 70


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 169 NFTSITITYRLLK 131
           NF+SI+IT++L +
Sbjct: 217 NFSSISITFKLAR 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,279
Number of Sequences: 438
Number of extensions: 2372
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)