Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0509
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    28   4.2  
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ...    28   4.2  
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ...    28   4.2  
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ...    28   4.2  
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    27   7.3  

>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 3   ARDFVQSKTKNVAILHRYNISRFVMITIHIIMM 101
           +R FV SK  +  +L    +SRF  + IH++++
Sbjct: 51  SRVFVDSKDSDSILLSDLGVSRFSTVIIHVLLL 83


>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 439

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 199 HSMKCNRVMSRVEKFLE 249
           HS  C RV SRVE F+E
Sbjct: 172 HSCDCGRVFSRVESFIE 188


>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 419

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 199 HSMKCNRVMSRVEKFLE 249
           HS  C RV SRVE F+E
Sbjct: 175 HSCDCGRVFSRVESFIE 191


>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 362

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 199 HSMKCNRVMSRVEKFLE 249
           HS  C RV SRVE F+E
Sbjct: 145 HSCDCGRVFSRVESFIE 161


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 50  QIQYIEICDDHYTYYYDGAIFVILNSNF 133
           Q++YI+IC +H+T +    I  + N  F
Sbjct: 375 QLRYIDICSNHFTGFLPPTISQLSNLEF 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,600,832
Number of Sequences: 28952
Number of extensions: 150535
Number of successful extensions: 356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)