Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0508
         (618 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09F14 Cluster: Heme maturase; n=1; Tetrahymena pigment...    35   1.8  
UniRef50_Q21787 Cluster: Putative uncharacterized protein sru-36...    33   7.2  

>UniRef50_Q09F14 Cluster: Heme maturase; n=1; Tetrahymena
           pigmentosa|Rep: Heme maturase - Tetrahymena pigmentosa
          Length = 522

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
 Frame = -3

Query: 436 VNNPLLLAYSLTFKT-FVNNSYVLTRFIILLNIAIIKSK*PIKTMSIFELYFFFS*ITIL 260
           +N+  ++ Y   F    V+  +++  +II++   +++S      ++    Y  +    I+
Sbjct: 218 INHKNIIWYKKIFNIKLVSYLFIILLYIIIVRYNLVQSIHNFIIINNLNQYLKYLIYVII 277

Query: 259 YYTQ-HKCQNPSHYNKIHTQKSSNHVQIIASFFIINMIMIPTHRFSKPSLPQLLKTRIN* 83
            YT  +   N   YNKI+ +  +N++ II +F  + +I+      S  +L  ++   I  
Sbjct: 278 IYTSIYLYANLYKYNKIYYKFKNNYINIILNFIYLLLILNIIFNISNNNLNNIINIFIMY 337

Query: 82  VGNLFCKFYI 53
           + N F  F I
Sbjct: 338 LNN-FINFII 346


>UniRef50_Q21787 Cluster: Putative uncharacterized protein sru-36;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein sru-36 - Caenorhabditis elegans
          Length = 328

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 310 TMSIFELYFFFS*ITILYYTQHKCQNPSHYNKIHTQKSSNHVQIIASFFIINMIMIPTH- 134
           T ++F+L +    I ++       + PSH+N  HT     +V II  +F+ N +   +  
Sbjct: 23  TQAVFQLTYMTPTIVVMLKIFMSFRGPSHWNSAHTMNHHIYV-IIMLYFLFNTLFFLSDF 81

Query: 133 -RFSKPS 116
            RFS P+
Sbjct: 82  LRFSLPA 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,219,763
Number of Sequences: 1657284
Number of extensions: 9789363
Number of successful extensions: 18150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18148
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)