Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0508
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   5.0  

>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 298 FELYFFFS*ITILYYTQHKCQNPSHYNKIHTQKSSNHVQIIASFFIINMIMIPTHR 131
           FELY F    T+ YY   K Q+ S  ++ H   S++ +      F++  +   T R
Sbjct: 356 FELYIFGMLATVKYYNFLKKQDDSILSQYHYLPSTSCISDYGETFLLEWMKTNTFR 411


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -3

Query: 244 KCQNPSHYNKIHTQKSSNHVQIIASFFIINMIMIPTHRFSKPSLPQLLKTRIN 86
           KC     +     Q+ S+ V +I  F + ++  + T   S+P L +L  +  N
Sbjct: 151 KCPLSEQFINFINQQDSDKVVLIRGFLLPHLASLTTKNVSEPELDKLRHSLYN 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,137
Number of Sequences: 5004
Number of extensions: 46745
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)