Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0508
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.2  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   4.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = -3

Query: 463 FSFRLRKRSVNNPLLLAYSLTFKTF-----VNNSYVLTRFI 356
           +  RLR      PLL+   LT  +F     VN  Y +T ++
Sbjct: 48  YDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDYTITMYL 88


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 300 IDMVLIGYLDFIIAMLSNIMNLVKT*ELFT 389
           I +  + +  +++   S I NLVK   LFT
Sbjct: 284 ISLWFMAWTPYLVINFSGIFNLVKISPLFT 313


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 300 IDMVLIGYLDFIIAMLSNIMNLVKT*ELFT 389
           I +  + +  +++   S I NLVK   LFT
Sbjct: 34  ISLWFMAWTPYLVINFSGIFNLVKISPLFT 63


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 430 NPLLLAYSLTFKTFVNNSY 374
           N  ++A S+  + F+NN Y
Sbjct: 542 NEYMMALSMKLQKFINNDY 560


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 260 QDGNLTKKKIKFKYR 304
           +DG   KKK+ + YR
Sbjct: 234 KDGGTVKKKVNYVYR 248


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 146 HNHIYNEK*SNNLYMV 193
           HN  YN   S NLY V
Sbjct: 262 HNLYYNSPSSENLYYV 277


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 140 WYHNHIYNEK*SNNLYMV*RFLGMYFIIM 226
           WY NH YN +   N ++    L  Y+  +
Sbjct: 208 WYLNHDYNLENKLNYFIEDIGLNTYYFFL 236


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 445 KRSVNNPLLLAYSLTFKTFVNNSYVLTRFIILLNI 341
           KR +N+ L + Y +        + +LT   +L+N+
Sbjct: 72  KRDINDVLNVLYFINKNDKYEENTILTTMPLLINV 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,083
Number of Sequences: 438
Number of extensions: 3315
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)