Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0508
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55850.1 68414.m06405 cellulose synthase family protein simil...    27   7.5  
At4g16015.1 68417.m02430 DC1 domain-containing protein contains ...    27   10.0 
At3g17540.1 68416.m02240 F-box family protein similar to hypothe...    27   10.0 

>At1g55850.1 68414.m06405 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-5 [gi:9622882]
           from Zea mays
          Length = 729

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 19  PIEESITGLVLQCKIYRTNFL 81
           P+E+ ITGL +QC+ +++ +L
Sbjct: 440 PVEDVITGLTIQCRGWKSAYL 460


>At4g16015.1 68417.m02430 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 535

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 377 LCFNKIHYITQHCN 336
           LC NK+HYI  HC+
Sbjct: 83  LCENKLHYIFYHCS 96


>At3g17540.1 68416.m02240 F-box family protein similar to
           hypothetical protein GB:AAD18122 from [Arabidopsis
           thaliana];contains Pfam PF00646: F-box domain; contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 396

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 HGLKIFGYVFYYNVMDSDICV 249
           H  KI  Y FYYN  D D CV
Sbjct: 158 HNYKILRYCFYYN--DQDACV 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,695,976
Number of Sequences: 28952
Number of extensions: 213964
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)