Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0507
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    28   1.2  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    25   6.5  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   8.6  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 229 HNARSTDRRDILCIRNLGNGVDISEKDYIIQIIYIHNRENVLSR 360
           HN R+   R+++C   L  G+DI   + +I   +  N E  L R
Sbjct: 325 HNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHR 368


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 229 HNARSTDRRDILCIRNLGNGVDISEKDYIIQIIYIHNRENVLSR 360
           H  R+   R ++    L  G+D+ +   +I      NREN + R
Sbjct: 302 HEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHR 345


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 463 AARPR*TNYSYVIVGARVFLSCRMYA 540
           AA  + TNY  ++ G R+FL C M A
Sbjct: 69  AASSKPTNYIPLLCGRRLFLVCLMAA 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,091
Number of Sequences: 5004
Number of extensions: 33442
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)