Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0507
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244...    28   5.1  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    27   8.9  
02_01_0164 + 1146093-1146119,1146682-1146955,1147309-1147684,114...    27   8.9  

>05_06_0238 -
           26621843-26622457,26622625-26623375,26624372-26624418,
           26624632-26624740,26624969-26625050,26625164-26625248,
           26625320-26625439,26625735-26625800,26625994-26626041,
           26626148-26626196,26626576-26626613
          Length = 669

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 419 SSIRINRLMLTSVDSTGRSHLD 354
           SS  INRL+ T+VD+ G  HLD
Sbjct: 327 SSNHINRLITTAVDAWGVEHLD 348


>04_04_1571 +
           34504087-34504421,34505002-34505731,34506091-34512077,
           34512493-34513964,34514114-34514377,34514761-34514978,
           34515759-34516030,34516190-34516559,34516578-34516797,
           34516819-34518931,34518941-34519193,34519269-34519401,
           34520597-34521114,34521207-34522115,34522195-34522368,
           34522833-34522882,34523963-34524035,34524413-34524477,
           34524736-34525522,34525622-34525878,34525989-34526109,
           34526315-34526956
          Length = 5320

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -1

Query: 393 AHFSRQYREVSSR*DIFSI---MYIDNLYNIIFLTNIYTV 283
           A  SR  R+V +  DI S+   +Y + +YN++FL N+ ++
Sbjct: 199 ASLSRLSRQVYTEDDILSLFAQLYEEAVYNLLFLKNVLSL 238


>02_01_0164 +
           1146093-1146119,1146682-1146955,1147309-1147684,
           1149021-1149239,1149572-1149710,1149844-1150092,
           1150556-1150855
          Length = 527

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +1

Query: 364 DLPVLSTEVSIKRLILMELVRGAACSF--I*LPLVAARPR*TNYSYVIVGARVFLSCRMY 537
           ++PV   +V    + +M  ++GA+ S   I L  + +     +  + +VG R  LSC   
Sbjct: 236 EIPVARDQVQKWFVWMMTAIQGASLSRCRIELTKIVSFVYIVDDIFDLVGTREELSCFTQ 295

Query: 538 A*RM**LVAWNLIPNCFPSVCVALN 612
           A RM  L A + +P+C  S   AL+
Sbjct: 296 AIRMWDLAAADSLPSCMRSCFRALH 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,374
Number of Sequences: 37544
Number of extensions: 221759
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)