Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0507
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006831-1|AAF39995.1|  558|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z73898-3|CAC42390.2|  606|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z73898-2|CAC42388.1|  667|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z73898-1|CAC42389.1|  647|Caenorhabditis elegans Hypothetical pr...    29   3.5  
M23064-1|AAA27892.1|  609|Caenorhabditis elegans Na+/H+ antiport...    29   3.5  
AF497835-1|AAM18113.1|  647|Caenorhabditis elegans putative Na-H...    29   3.5  
AF497834-1|AAM18112.1|  667|Caenorhabditis elegans putative Na-H...    29   3.5  
AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    27   8.0  

>AC006831-1|AAF39995.1|  558|Caenorhabditis elegans Hypothetical
           protein ZK121.2 protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 462 DERQSNKTTCGSPHEFHQN*SFNAHFSRQYREVSS 358
           ++R   + TCGS  E H   SF  H + QY   +S
Sbjct: 242 EDRLKRQNTCGSRKELHHMESFGDHSTSQYGSQAS 276


>Z73898-3|CAC42390.2|  606|Caenorhabditis elegans Hypothetical
           protein ZK822.3c protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 573 QIPSHQSLHSSRVHSTREENA--RADYNV 493
           Q+PS    HS R  ST + NA  RAD+NV
Sbjct: 578 QLPSETPFHSGRRQSTGDLNATRRADFNV 606


>Z73898-2|CAC42388.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK822.3b protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 573 QIPSHQSLHSSRVHSTREENA--RADYNV 493
           Q+PS    HS R  ST + NA  RAD+NV
Sbjct: 639 QLPSETPFHSGRRQSTGDLNATRRADFNV 667


>Z73898-1|CAC42389.1|  647|Caenorhabditis elegans Hypothetical
           protein ZK822.3a protein.
          Length = 647

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 573 QIPSHQSLHSSRVHSTREENA--RADYNV 493
           Q+PS    HS R  ST + NA  RAD+NV
Sbjct: 619 QLPSETPFHSGRRQSTGDLNATRRADFNV 647


>M23064-1|AAA27892.1|  609|Caenorhabditis elegans Na+/H+ antiporter
           protein.
          Length = 609

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 573 QIPSHQSLHSSRVHSTREENA--RADYNV 493
           Q+PS    HS R  ST + NA  RAD+NV
Sbjct: 581 QLPSETPFHSGRRQSTGDLNATRRADFNV 609


>AF497835-1|AAM18113.1|  647|Caenorhabditis elegans putative Na-H
           exchanger isoform 9b protein.
          Length = 647

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 573 QIPSHQSLHSSRVHSTREENA--RADYNV 493
           Q+PS    HS R  ST + NA  RAD+NV
Sbjct: 619 QLPSETPFHSGRRQSTGDLNATRRADFNV 647


>AF497834-1|AAM18112.1|  667|Caenorhabditis elegans putative Na-H
           exchanger isoform 9a protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 573 QIPSHQSLHSSRVHSTREENA--RADYNV 493
           Q+PS    HS R  ST + NA  RAD+NV
Sbjct: 639 QLPSETPFHSGRRQSTGDLNATRRADFNV 667


>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 229 HNARSTDRRDILCIRNLGNGVDISEKDYIIQIIYIHNRENVLSR 360
           H+ R  + R+++C   L  G+DI   + +I   +  N E  L R
Sbjct: 324 HDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHR 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,709,598
Number of Sequences: 27780
Number of extensions: 189020
Number of successful extensions: 413
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)