Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0507
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containi...    29   3.2  
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa...    28   5.6  
At5g23520.1 68418.m02760 expressed protein                             27   9.8  
At2g37610.1 68415.m04614 hypothetical protein                          27   9.8  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    27   9.8  

>At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 637

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 561 HQSLHSSRVHSTREENARADYNVTIICLTRSRGDERQSNK 442
           H+S H SR     E+N R    + ++CL +S  D  +++K
Sbjct: 39  HRSFHVSRA---LEDNFRRSNGIGLVCLEKSHNDRTKNSK 75


>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1092

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 229 HNARSTDRRDILCIRNL---GNGVDISEKDYIIQIIYIHNRENVLSR*DLPVLSTEVSIK 399
           + AR+  R      RNL   GNG D  ++   +  I   N ENVL+R D+     E  ++
Sbjct: 245 NGARAARRPAGQANRNLAGEGNGEDAGDQGAAVGQIARRNPENVLARLDIQAARLEAQVE 304

Query: 400 RL 405
           ++
Sbjct: 305 QM 306


>At5g23520.1 68418.m02760 expressed protein 
          Length = 435

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 607 RQRKHLGSNSESNSKPPIITFVTRTFYTRGKRAR 506
           RQ++ L S  E +  PP+ T V  +F  RG+  R
Sbjct: 19  RQKQGLESEVEGDPFPPVSTSVNASFGVRGRLRR 52


>At2g37610.1 68415.m04614 hypothetical protein
          Length = 161

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 537 VHSTREENARADYNVTIICLTRSRGDERQSNK 442
           V  TREE    D  V  ICL R R DE +  +
Sbjct: 56  VKETREEECSDDKLVLDICLKRKRLDEEEEEE 87


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 597 NTWEAIRNQIPSHQSLHSSRVHSTREENARADYNVTI 487
           NTW A+  ++ + +S + ++++S      R+DY V +
Sbjct: 345 NTWGAVNLRLKNQRSSNHAQIYSAAWYPTRSDYGVGV 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,952,631
Number of Sequences: 28952
Number of extensions: 169505
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)