Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0506
         (620 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico...    42   0.009
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    39   0.084
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    35   1.8  
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    34   2.4  
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli...    34   3.1  
UniRef50_Q0I9P5 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  

>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
           eudicotyledons|Rep: Polyprotein, putative - Solanum
           demissum (Wild potato)
          Length = 868

 Score = 42.3 bits (95), Expect = 0.009
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 123 RGEGRPKKKWMDCVKDDMCKRGVSEEMVYDREVWKKK 13
           RG GRPKK W + ++ D+    ++E+M  DR+ W+ +
Sbjct: 650 RGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSR 686


>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 39.1 bits (87), Expect = 0.084
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 123 RGEGRPKKKWMDCVKDDMCKRGVSEEMVYDREVWKK 16
           RG GRPKK   + +K D+   G+   MV DR +W+K
Sbjct: 334 RGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRK 369


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=2;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 958

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -3

Query: 123  RGEGRPKKKWMDCVKDDMCKRGV-----SEEMVYDREVWK 19
            R  GRP K+W DC+K D   R V     +  +  DR+VW+
Sbjct: 887  RPRGRPAKRWTDCIKADCKNRQVDSLTKATRLTEDRKVWQ 926


>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -3

Query: 126  DRGEGRPKKKWMDCVKDDMCKRGV-----SEEMVYDREVW 22
            +R  GRP K+W+DC+ +D   R +     +  +  DR+ W
Sbjct: 973  NRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKTW 1012


>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
           Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to fibropellin Ia - Strongylocentrotus
           purpuratus
          Length = 1096

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -3

Query: 114 GRPKKKWMDCVKDDMCKRGV-----SEEMVYDREVWK 19
           GRP K+W DC+K D   R V     +  +  DR+VW+
Sbjct: 29  GRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWR 65


>UniRef50_Q0I9P5 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. CC9311|Rep: Putative uncharacterized
           protein - Synechococcus sp. (strain CC9311)
          Length = 118

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = -3

Query: 144 VFNDLEDRGEGRPKKK-W-MDCVKDDMCKRGVSEEMVYDREV---WKKKTC 7
           V++ L + G    K + W  DCVK  M KRG +  +V+D +    +KKKTC
Sbjct: 41  VYSRLGNAGRWEKKAQLWDKDCVKKTMKKRGYANAVVFDPDEMSDFKKKTC 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,537,452
Number of Sequences: 1657284
Number of extensions: 10191984
Number of successful extensions: 20551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20549
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)