Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0506
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0164 + 10972526-10972723,10972818-10973549,10974148-109742...    29   3.9  
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    27   9.1  
04_04_0398 + 24933894-24933916,24934015-24934555                       27   9.1  
04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012     27   9.1  

>11_03_0164 +
           10972526-10972723,10972818-10973549,10974148-10974285,
           10974522-10974991,10975069-10975239,10975320-10975602,
           10975682-10975795
          Length = 701

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 317 TSVCYWQLITLSISLYSIFEDRFFW 243
           TSV +W L++LS+S  S  + +F W
Sbjct: 14  TSVSHWNLLSLSLSYGSDIDSKFEW 38


>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 43  HFFAHSPLTHIVFHAIHPFLLR 108
           HF A  PL H  FH  HP+++R
Sbjct: 366 HFAASFPLWHRKFHWRHPWIIR 387


>04_04_0398 + 24933894-24933916,24934015-24934555
          Length = 187

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 108 PKKKWMDCVKDDMCKRGVSEE-MVYDREVWKK 16
           PKKK+  CV+D+   + ++E+ MV    +W++
Sbjct: 19  PKKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50


>04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012
          Length = 401

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 345 LKHPKNSNANIE*LIRLICNLPPDSMRLTGSQNA 446
           LKH   ++ N+E L   +C LP DS +  G   A
Sbjct: 317 LKHFLQNSPNLEKLTLRLCELPKDSKKRKGKAKA 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,426
Number of Sequences: 37544
Number of extensions: 254615
Number of successful extensions: 448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)