Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0506
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.7  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   9.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 191 FNLITYYLIIQEI*VWYLTI*RIEEK 114
           +N I YYL+      WYLT   + E+
Sbjct: 192 YNNIDYYLLAANYTGWYLTKHNVPEQ 217


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 191 FNLITYYLIIQEI*VWYLTI*RIEEK 114
           +N I YYL+      WYLT   + E+
Sbjct: 192 YNNIDYYLLAANYTGWYLTKHNVPEQ 217


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 45  FLRSLP--SYTYRLSRNPSISS*VYLLLYPLDR*IPNLNL 158
           ++R  P  S  Y +  + ++S  + L LYPLDR + +L +
Sbjct: 139 YIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 45  FLRSLP--SYTYRLSRNPSISS*VYLLLYPLDR*IPNLNL 158
           ++R  P  S  Y +  + ++S  + L LYPLDR + +L +
Sbjct: 139 YIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 36  HIPFLRSLPSYTYR 77
           H+ FLR++P Y+++
Sbjct: 141 HVSFLRTVPPYSHQ 154


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 541 IDLNSISRKHLEMKVKIIWSYFI 609
           + L +I  +H EMK+K   + F+
Sbjct: 257 LSLTNIQLEHFEMKIKRKHNVFV 279


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 568 VSLKSNLNR*KKTIKNIR 515
           +S K  +   KKTIKN+R
Sbjct: 23  MSKKMTIEEAKKTIKNLR 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,973
Number of Sequences: 438
Number of extensions: 3744
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)