Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0505
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1559 + 38247463-38247499,38247711-38247747,38248181-382482...    29   2.8  
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562...    28   5.0  

>01_06_1559 +
           38247463-38247499,38247711-38247747,38248181-38248276,
           38248671-38248788,38248844-38248878,38249173-38249452,
           38249701-38249820,38250369-38250620
          Length = 324

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -3

Query: 370 RKASLCRLGLCCLVPTVQEXVLCLSILVLFALEMRXFACSASNVLWGLLRS*RKKVILRI 191
           RKA L  +GL  LV ++   V+ +S+L L     + F C  +  ++ +        I+R+
Sbjct: 145 RKARLKMMGLLGLVTSIFTMVVLVSLLALHGQGRKLF-CGLAATIFSICMYASPLSIMRL 203

Query: 190 HTMTKS----DHLINMNCFFCSNKF 128
              TKS      L++++ F C   +
Sbjct: 204 VIKTKSVEFMPFLLSLSVFLCGTSW 228


>09_06_0270 +
           21954652-21955245,21955827-21955964,21956050-21956295,
           21956407-21956520,21956633-21956815,21956926-21957143,
           21957210-21957246,21957865-21958219,21958284-21958337,
           21958513-21958529
          Length = 651

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 283 IEQEYLDKELIPEPWELNNTA--RAGREMLFFNR 378
           IEQEY+ + L+  PW L+       G+ ++FF R
Sbjct: 329 IEQEYIGRMLLKYPWILSTCVLENYGQMLMFFQR 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,992,896
Number of Sequences: 37544
Number of extensions: 225810
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)