Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0505
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89) 28 5.1
SB_51888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_51705| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_50119| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_43838| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68) 28 6.7
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_34139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_33062| Best HMM Match : DUF485 (HMM E-Value=7.5) 28 6.7
SB_24999| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23) 28 6.7
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 28 6.7
SB_967| Best HMM Match : Calx-beta (HMM E-Value=2.8) 28 6.7
SB_57935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_50082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_46902| Best HMM Match : GYR (HMM E-Value=1.1) 28 6.7
SB_44853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_39698| Best HMM Match : Rho_RNA_bind (HMM E-Value=3.4) 28 6.7
SB_26734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_26387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82) 28 6.7
SB_25779| Best HMM Match : DUF485 (HMM E-Value=5.1) 28 6.7
SB_7465| Best HMM Match : RHH_1 (HMM E-Value=6.7) 28 6.7
SB_2527| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 27 8.8
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 27 8.8
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 4 YQAYRYRRPRVLARLMN 54
+QAYRYRRPR ARL++
Sbjct: 525 HQAYRYRRPRGGARLLS 541
>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
Length = 724
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 1 RYQAYRYRRPRVLAR 45
+YQAYRYRRPR AR
Sbjct: 431 QYQAYRYRRPRGGAR 445
>SB_51888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 87 YQAYRYRRPRGGAR 100
>SB_51705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 66 YQAYRYRRPRGGAR 79
>SB_50119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 26
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 6 YQAYRYRRPRGGAR 19
>SB_43838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 37 YQAYRYRRPRGGAR 50
>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
Length = 1113
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 593 YQAYRYRRPRGGAR 606
>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 116 YQAYRYRRPRGGAR 129
>SB_34139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 49
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 29 YQAYRYRRPRGGAR 42
>SB_33062| Best HMM Match : DUF485 (HMM E-Value=7.5)
Length = 168
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 27 YQAYRYRRPRGGAR 40
>SB_24999| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 65 YQAYRYRRPRGGAR 78
>SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23)
Length = 435
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 14 YQAYRYRRPRGGAR 27
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 533 YQAYRYRRPRGGAR 546
>SB_967| Best HMM Match : Calx-beta (HMM E-Value=2.8)
Length = 123
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 1 RYQAYRYRRPRVLAR 45
R+QAYRYRRPR AR
Sbjct: 102 RHQAYRYRRPRGGAR 116
>SB_57935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 27 YQAYRYRRPRGGAR 40
>SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 96 YQAYRYRRPRGGAR 109
>SB_50082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 21 YQAYRYRRPRGGAR 34
>SB_46902| Best HMM Match : GYR (HMM E-Value=1.1)
Length = 54
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 1 RYQAYRYRRPRVLAR 45
R+QAYRYRRPR AR
Sbjct: 33 RHQAYRYRRPRGGAR 47
>SB_44853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 43 YQAYRYRRPRGGAR 56
>SB_39698| Best HMM Match : Rho_RNA_bind (HMM E-Value=3.4)
Length = 128
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 37 YQAYRYRRPRGGAR 50
>SB_26734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 94 YQAYRYRRPRGGAR 107
>SB_26387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 44
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 24 YQAYRYRRPRGGAR 37
>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
Length = 167
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 147 YQAYRYRRPRGGAR 160
>SB_25779| Best HMM Match : DUF485 (HMM E-Value=5.1)
Length = 236
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 35 YQAYRYRRPRGGAR 48
>SB_7465| Best HMM Match : RHH_1 (HMM E-Value=6.7)
Length = 71
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 1 RYQAYRYRRPR 33
+YQAYRYRRPR
Sbjct: 57 KYQAYRYRRPR 67
>SB_2527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 44
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 4 YQAYRYRRPRVLAR 45
YQAYRYRRPR AR
Sbjct: 24 YQAYRYRRPRGGAR 37
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 4 YQAYRYRRPRVLARLMNS 57
+QAYRYRRPR AR +N+
Sbjct: 125 HQAYRYRRPRGGARHINA 142
>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1239
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 217 RSAISPKGH*KRNKRXXASQEQIEQEYLDKELIPEPWELNNTARAGREMLFFNRVP--KV 390
R+ I +G R+ +S E + + D L+ + WE + E + F+RV +
Sbjct: 355 RTIIGSEGDKSRDFDFLSSLEVVVLDQADVFLM-QNWE--HVQELVPERMVFHRVTCQSI 411
Query: 391 GSQTFMELLRRLAIRNQFGKIFFYR 465
GS TF ++ R+ ++ FFY+
Sbjct: 412 GSLTFYQVFHRVTCQSNGSLTFFYQ 436
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 229 SPKGH*KRNKRXXASQEQIEQEYLDKELIPEPWELNNT 342
+P+G +RN+R S +E LD E P P + +NT
Sbjct: 1078 TPRGELRRNRRHLKSLPDESKETLDCEPDPVPPDADNT 1115
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 7 QAYRYRRPRVLARLM 51
QAYRYRRPR ARL+
Sbjct: 642 QAYRYRRPRGGARLL 656
>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1918
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 7 QAYRYRRPRVLARLMNSNSFLYIQD 81
QAYRYRRPR AR S F +++
Sbjct: 664 QAYRYRRPRGGARSNRSTVFSMLRE 688
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,327
Number of Sequences: 59808
Number of extensions: 270536
Number of successful extensions: 1025
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -