Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0505
         (603 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63395-1|AAD13475.1|  291|Homo sapiens gamma-sarcoglycan protein.      29   9.5  
U34976-1|AAC50269.1|  291|Homo sapiens gamma-sarcoglycan protein.      29   9.5  
BC109321-1|AAI09322.1|  291|Homo sapiens sarcoglycan, gamma (35k...    29   9.5  
BC074778-1|AAH74778.1|  291|Homo sapiens sarcoglycan, gamma (35k...    29   9.5  
BC074777-1|AAH74777.1|  291|Homo sapiens sarcoglycan, gamma (35k...    29   9.5  
AL356287-2|CAI16053.1|  291|Homo sapiens sarcoglycan, gamma (35k...    29   9.5  
AL160256-3|CAI16544.1|  291|Homo sapiens sarcoglycan, gamma (35k...    29   9.5  
AL157766-4|CAI13924.1|  291|Homo sapiens sarcoglycan, gamma (35k...    29   9.5  

>U63395-1|AAD13475.1|  291|Homo sapiens gamma-sarcoglycan protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 QYLMRFGLKGWASRCNYLRPIMLNIM 525
           QY+ + G+ GW  RC YL  ++L I+
Sbjct: 21  QYVYKIGIYGWRKRCLYLFVLLLLII 46


>U34976-1|AAC50269.1|  291|Homo sapiens gamma-sarcoglycan protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 QYLMRFGLKGWASRCNYLRPIMLNIM 525
           QY+ + G+ GW  RC YL  ++L I+
Sbjct: 21  QYVYKIGIYGWRKRCLYLFVLLLLII 46


>BC109321-1|AAI09322.1|  291|Homo sapiens sarcoglycan, gamma (35kDa
           dystrophin-associated glycoprotein) protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 QYLMRFGLKGWASRCNYLRPIMLNIM 525
           QY+ + G+ GW  RC YL  ++L I+
Sbjct: 21  QYVYKIGIYGWRKRCLYLFVLLLLII 46


>BC074778-1|AAH74778.1|  291|Homo sapiens sarcoglycan, gamma (35kDa
           dystrophin-associated glycoprotein) protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 QYLMRFGLKGWASRCNYLRPIMLNIM 525
           QY+ + G+ GW  RC YL  ++L I+
Sbjct: 21  QYVYKIGIYGWRKRCLYLFVLLLLII 46


>BC074777-1|AAH74777.1|  291|Homo sapiens sarcoglycan, gamma (35kDa
           dystrophin-associated glycoprotein) protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 QYLMRFGLKGWASRCNYLRPIMLNIM 525
           QY+ + G+ GW  RC YL  ++L I+
Sbjct: 21  QYVYKIGIYGWRKRCLYLFVLLLLII 46


>AL356287-2|CAI16053.1|  291|Homo sapiens sarcoglycan, gamma (35kDa
           dystrophin-associated glycoprotein) protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 QYLMRFGLKGWASRCNYLRPIMLNIM 525
           QY+ + G+ GW  RC YL  ++L I+
Sbjct: 21  QYVYKIGIYGWRKRCLYLFVLLLLII 46


>AL160256-3|CAI16544.1|  291|Homo sapiens sarcoglycan, gamma (35kDa
           dystrophin-associated glycoprotein) protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 QYLMRFGLKGWASRCNYLRPIMLNIM 525
           QY+ + G+ GW  RC YL  ++L I+
Sbjct: 21  QYVYKIGIYGWRKRCLYLFVLLLLII 46


>AL157766-4|CAI13924.1|  291|Homo sapiens sarcoglycan, gamma (35kDa
           dystrophin-associated glycoprotein) protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 QYLMRFGLKGWASRCNYLRPIMLNIM 525
           QY+ + G+ GW  RC YL  ++L I+
Sbjct: 21  QYVYKIGIYGWRKRCLYLFVLLLLII 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,765,395
Number of Sequences: 237096
Number of extensions: 1388702
Number of successful extensions: 6927
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6927
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)