Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0505
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    33   0.19 
At1g31950.1 68414.m03927 terpene synthase/cyclase family protein...    30   1.0  
At4g14110.1 68417.m02178 COP9 signalosome subunit, putative / CS...    28   5.5  
At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4)...    27   7.2  
At1g18850.1 68414.m02347 expressed protein                             27   9.6  

>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 435 SDGQSS**FHEGLTSDLGHPVEEKHLSAGSGC 340
           SDG+S     +G  +DLGHP+E++   + S C
Sbjct: 468 SDGESQSSLEKGCDNDLGHPLEDQDAPSSSSC 499


>At1g31950.1 68414.m03927 terpene synthase/cyclase family protein
           similar to sesquiterpene synthases
           [GI:11934937][Lycopersicon hirsutum],
           [GI:11934933][Lycopersicon esculentum]; contains Pfam
           profile: PF01397: Terpene synthase family
          Length = 606

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 330 TKQHSPSRQRDAFLQQGAQGRKSDLHGTIKTTGHQKSIW*DIFL 461
           T    P++Q+D F+   ++    DL  ++ T     S+W D FL
Sbjct: 37  TPSWKPAKQQDFFVASSSKKSSDDLESSLPTPHFSPSLWGDHFL 80


>At4g14110.1 68417.m02178 COP9 signalosome subunit, putative / CSN
           subunit, putative (CSN8) CSN8, FUS7; identical to cDNA
           CSN complex subunit 8 (CSN8)  GI:18056672
          Length = 197

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 413 Y*DDWPSEINLVRYFFIE 466
           Y DDWP  I+L+ YF+++
Sbjct: 36  YHDDWPYAIHLLGYFYVD 53


>At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4) /
           gibberellin-responsive protein 4 identical to SP|P46690
           Gibberellin-regulated protein 4 precursor {Arabidopsis
           thaliana}
          Length = 106

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 310 VLCLSILVLFALEMRXFACSASNVLWGLLR 221
           +  L+++VLF L+    A S SNV W   R
Sbjct: 8   IFLLTLIVLFMLQTMVMASSGSNVKWSQKR 37


>At1g18850.1 68414.m02347 expressed protein
          Length = 399

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 379 PC*RKASLCRLGLCCLVPTVQEXVLCLSILV 287
           PC + AS   L LC  VP + +   CL +L+
Sbjct: 318 PCPKAASKLGLKLCNWVPELTDITKCLGLLI 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,877,631
Number of Sequences: 28952
Number of extensions: 196340
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)