Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0504
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    81   1e-16
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    40   4e-04
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    27   1.7  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   6.7  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.7  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   6.7  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   8.8  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.8  
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    25   8.8  
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    25   8.8  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    25   8.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 35/56 (62%), Positives = 45/56 (80%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
           L +FV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +3

Query: 483 TKEAQHHPIGTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           +K+  +   G N V  L+E KKA  V+IA DVDPIELV+FLPALC+
Sbjct: 126 SKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCK 171



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 22/49 (44%), Positives = 26/49 (53%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLSNL*DGPSISASSARRLYFSVV*KCP 328
           NPLF  RP++F IGQ IQP RDLS     P       RR   ++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G N  TK + +  + F+V+A D +PIE++L LP LC
Sbjct: 35  GANEATKTLNRGISEFIVMAADTEPIEILLHLPLLC 70


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 393 QNLEKALSCSLVQCLGKLVDRRGHFQTT----LKYSLLALDADILGPSYKLDKSRV 238
           ++L K  SC L + +   +D+R H  +     L YS +ALDA      +KLDK+ +
Sbjct: 37  RSLAKKFSCKLDRDI-YAIDQRCHGDSPCVAPLSYSAMALDAFQFMKDHKLDKASI 91


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 295 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 396
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 279 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 368
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 477 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 307
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
            heterochromatin assembly Hrr1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 498  HHPIGTNTVTKLVEKKKA---HFVVIAHDVDPIELV 596
            H P+ T   T  V  KK+    F  + H VDP+EL+
Sbjct: 971  HLPLFTKDGTIYVNGKKSKQFQFNFLTHSVDPVELL 1006


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 482 HQRGPTPSDRHKHSHQAGR 538
           H   P P+ R KH HQ  +
Sbjct: 76  HASNPHPNSRQKHQHQTSK 94


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +1

Query: 367 TAKGLFKILEKYR 405
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G    +K +++++AH  V+    D    V  + ALC
Sbjct: 52  GIREASKALDRRQAHLCVLCESCDQEAYVKLVEALC 87


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G    +K +++++AH  V+    D    V  + ALC
Sbjct: 49  GIREASKALDRRQAHLCVLCESCDQEAYVKLVEALC 84


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -1

Query: 334 SEGALSDDAEVQPSG------AGCGYTWAILQIGQVTSWLNALTNSKVLWPLLEERIHDL 173
           S+  L D     PSG      AG G+  AI   GQ+  + N  ++ KV+ PL+   I   
Sbjct: 147 SDKVLQDGFRSFPSGHTSFSFAGLGFL-AIFLAGQLKMFRNKTSSWKVVVPLVPLSIASW 205

Query: 172 LGLN 161
           +GL+
Sbjct: 206 IGLS 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,971
Number of Sequences: 5004
Number of extensions: 37370
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)