Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0504
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 83 1e-16
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 83 1e-16
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 66 2e-11
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 37 0.015
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 36 0.034
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.74
05_03_0685 + 16992899-16993570 29 3.0
01_04_0015 - 15103044-15103191,15103253-15103313,15104580-151046... 29 3.9
09_06_0304 - 22154086-22154364,22154679-22155058,22155763-22156183 28 5.2
08_02_0326 - 15810065-15810315,15811653-15811787,15812466-158125... 28 5.2
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 28 5.2
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 28 5.2
02_05_0358 + 28264928-28266049 28 5.2
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 28 6.9
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 28 6.9
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.9
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 83.4 bits (197), Expect = 1e-16
Identities = 36/55 (65%), Positives = 46/55 (83%)
Frame = +1
Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 411
L +FV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
G N VT L+E+ KA VVIAHDVDPIELV++LPALCR
Sbjct: 131 GLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCR 167
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 182 NPLFEKRPKNFAIGQGIQPTRDLSNL*DGPSI 277
NPLFEKRPK F IG + P +DL P +
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 53
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 83.4 bits (197), Expect = 1e-16
Identities = 36/55 (65%), Positives = 46/55 (83%)
Frame = +1
Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 411
L +FV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
G N VT L+E+ KA VVIAHDVDPIELV++LPALCR
Sbjct: 115 GLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCR 151
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 182 NPLFEKRPKNFAIGQGIQPTRDLSNL*DGPSI 277
NPLFEKRPK F IG + P +DL P +
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 37
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +1
Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 411
L +FVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
G + VT L+E+ KA VVIAHDVDPIELV++LPALCR
Sbjct: 116 GLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCR 152
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 182 NPLFEKRPKNFAIGQGIQPTRDL 250
NPLFEKRPK F IG + P +DL
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDL 45
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPAL 614
G N TK + + A FVV+A D +P+E++L LP L
Sbjct: 36 GANEATKTLNRGIAEFVVMAADAEPLEILLHLPLL 70
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPAL 614
G N TK + + + FVV+A D +P+E++L LP L
Sbjct: 38 GANEATKTLNRGISEFVVMAADTEPLEILLHLPLL 72
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 279 PHPAPEGCTSASSESAPSDQP 341
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>05_03_0685 + 16992899-16993570
Length = 223
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 246 TCPICKMAQVYPHPAPEGCTSASSESAPSDQPIYP 350
TCP+C+ + P PAP T+A + Q + P
Sbjct: 173 TCPLCRAGVLPPAPAPPCPTTAPHDDDGQQQVVAP 207
>01_04_0015 -
15103044-15103191,15103253-15103313,15104580-15104643,
15104820-15104962,15105031-15105127
Length = 170
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +1
Query: 187 SLREEAKELCYWSGHSANS*LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 366
+L + KE CY H+ + + FV W + I R + +L R + + + T ++ T
Sbjct: 68 NLLVKRKEQCYTWWHTQDEVMTNFVEW---MFIYRDEGILSRTIPLSESAARGTLQME-T 123
Query: 367 TAKGLFKILEK 399
+ + L K LE+
Sbjct: 124 SDEALLKALEQ 134
>09_06_0304 - 22154086-22154364,22154679-22155058,22155763-22156183
Length = 359
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 286 GCGYTWAILQIGQVTSWLNALTNSKVLWPLLEERIHDLLG 167
GCG WA +G V S +NA+ +L L E+++ D G
Sbjct: 139 GCGSCWAFSAVGAVES-INAIATGNLL-TLSEQQVLDCSG 176
>08_02_0326 -
15810065-15810315,15811653-15811787,15812466-15812564,
15813334-15813352
Length = 167
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 494 PTPSD-RHKHSHQAGREEEGALCG-HRS*C 577
P P D RHK+SHQ+ +E G C H C
Sbjct: 74 PAPEDLRHKNSHQSLKETWGLFCSMHHMGC 103
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
G V K + + + +IA ++ PI+++ +P LC
Sbjct: 48 GVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILC 83
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
G V K + + VIA ++ PI+++ +P LC
Sbjct: 48 GVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILC 83
>02_05_0358 + 28264928-28266049
Length = 373
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 246 TCPICKMAQVYPH-PAPEGCTSASSESAPSD 335
+CP+C+ PH P P +A+S +A D
Sbjct: 186 SCPLCRATVSLPHPPLPTAAAAAASNAAQQD 216
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
G K +EK A V+A D D + V + ALC
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALC 76
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
G K +EK A V+A D D + V + ALC
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALC 76
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 227 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 135
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,743
Number of Sequences: 37544
Number of extensions: 281269
Number of successful extensions: 970
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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