Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0504
(622 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 3e-17
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 61 8e-10
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 40 0.002
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 35 0.061
SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_38231| Best HMM Match : Yippee (HMM E-Value=4) 29 3.0
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 28 5.3
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 5.3
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_56432| Best HMM Match : ATP-synt_8 (HMM E-Value=5.3) 27 9.3
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 85.8 bits (203), Expect = 3e-17
Identities = 36/56 (64%), Positives = 47/56 (83%)
Frame = +1
Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
L +FVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 51 LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
G N +T LVE KKA VVIAHDVDPIE+V++LPALCR
Sbjct: 139 GINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCR 175
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
NPL EKRP+NF IG IQP RDLS
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLS 52
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
G N +T LVE KKA VVIAHDVDPIE+V++LPALCR
Sbjct: 48 GINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCR 84
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
G N TK + + A F+V+A D +P+E++L LP LC
Sbjct: 97 GANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLC 132
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 34.7 bits (76), Expect = 0.061
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
G V K + K + FV++A DV PI+++ +P +C
Sbjct: 102 GVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMC 137
>SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 223 SGHSANS*LVQFVRWPKYIRIQRQKAVL 306
SGH+ N L Q ++W KYI ++ K L
Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31
>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
Length = 230
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 223 SGHSANS*LVQFVRWPKYIRIQRQKAVL 306
SGH+ N L Q ++W KYI ++ K L
Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31
>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 223 SGHSANS*LVQFVRWPKYIRIQRQKAVL 306
SGH+ N L Q ++W KYI ++ K L
Sbjct: 546 SGHAQNQRLSQSIQWNKYINCKKNKTNL 573
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 175 DRESSLREEAKELCYWSGHSANS*LVQFV 261
DR ++ E KE+CYW GH + + + V
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLV 214
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 492 PLWWRLIFLGNLSFSSFPQPLFPG 421
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 175 DRESSLREEAKELCYWSGHSANS*LVQFV 261
DR ++ E KE+CYW GH + + + V
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLV 164
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 303 TSASSESAPSDQPIYPDTG 359
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_56432| Best HMM Match : ATP-synt_8 (HMM E-Value=5.3)
Length = 117
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 213 LLLVRAFSQLVTCPICKMAQVYPHPAPEGCTSASSESAPSDQPIYP 350
++L+ S + TCP+ K P S+SS S+P+ + P
Sbjct: 64 IILIIITSNITTCPMGKERSAKVMSPPSSSFSSSSSSSPATSHLAP 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,247
Number of Sequences: 59808
Number of extensions: 289301
Number of successful extensions: 862
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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