Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0504
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...   103   3e-22
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...   103   3e-22
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...   103   3e-22
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...   103   3e-22
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...   103   3e-22
AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi p...    39   0.005
AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA...    39   0.005

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score =  103 bits (246), Expect = 3e-22
 Identities = 46/56 (82%), Positives = 53/56 (94%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
           L +FVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +3

Query: 486 KEAQHHPIGTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           K+  +   GTNTVTKL+E+KKA  VVIAHDVDP+ELVLFLPALCR
Sbjct: 136 KKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCR 180



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           N LFEKRPKNF IGQ +QP RDLS
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLS 57


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score =  103 bits (246), Expect = 3e-22
 Identities = 46/56 (82%), Positives = 53/56 (94%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
           L +FVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +3

Query: 486 KEAQHHPIGTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           K+  +   GTNTVTKL+E+KKA  VVIAHDVDP+ELVLFLPALCR
Sbjct: 136 KKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCR 180



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           N LFEKRPKNF IGQ +QP RDLS
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLS 57


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score =  103 bits (246), Expect = 3e-22
 Identities = 46/56 (82%), Positives = 53/56 (94%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
           L +FVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +3

Query: 486 KEAQHHPIGTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           K+  +   GTNTVTKL+E+KKA  VVIAHDVDP+ELVLFLPALCR
Sbjct: 136 KKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCR 180



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           N LFEKRPKNF IGQ +QP RDLS
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLS 57


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score =  103 bits (246), Expect = 3e-22
 Identities = 46/56 (82%), Positives = 53/56 (94%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
           L +FVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +3

Query: 486 KEAQHHPIGTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           K+  +   GTNTVTKL+E+KKA  VVIAHDVDP+ELVLFLPALCR
Sbjct: 136 KKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCR 180



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           N LFEKRPKNF IGQ +QP RDLS
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLS 57


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score =  103 bits (246), Expect = 3e-22
 Identities = 46/56 (82%), Positives = 53/56 (94%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
           L +FVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +3

Query: 486 KEAQHHPIGTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           K+  +   GTNTVTKL+E+KKA  VVIAHDVDP+ELVLFLPALCR
Sbjct: 136 KKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCR 180



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           N LFEKRPKNF IGQ +QP RDLS
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLS 57


>AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi
           protein.
          Length = 127

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G N  TK + +  A  VV+A D +PIE++L LP LC
Sbjct: 37  GANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLC 72


>AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA
           protein.
          Length = 127

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G N  TK + +  A  VV+A D +PIE++L LP LC
Sbjct: 37  GANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLC 72


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,352,401
Number of Sequences: 53049
Number of extensions: 441655
Number of successful extensions: 1339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)